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V3<> main sync #2330

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V3<> main sync #2330

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@jhamman jhamman commented Oct 10, 2024

This PR merges the history from the main branch into the v3 branch. The merge was done with --strategy ours, favoring changes that occurred in the v3 branch over those on main.

Toward: #2308

TODO:

  • Add unit tests and/or doctests in docstrings
  • Add docstrings and API docs for any new/modified user-facing classes and functions
  • New/modified features documented in docs/tutorial.rst
  • Changes documented in docs/release.rst
  • GitHub Actions have all passed
  • Test coverage is 100% (Codecov passes)

dependabot bot and others added 30 commits December 4, 2023 09:13
@dependabot
Bump pypa/gh-action-pypi-publish from 1.8.10 to 1.8.11 (zarr-develope…
ea90564 
…rs#1586)

Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.10 to 1.8.11.
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.8.10...v1.8.11)

---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump conda-incubator/setup-miniconda from 2.3.0 to 3.0.1 (zarr-develo…
79e80b3 
…pers#1587)

Bumps [conda-incubator/setup-miniconda](https://github.com/conda-incubator/setup-miniconda) from 2.3.0 to 3.0.1.
- [Release notes](https://github.com/conda-incubator/setup-miniconda/releases)
- [Changelog](https://github.com/conda-incubator/setup-miniconda/blob/main/CHANGELOG.md)
- [Commits](conda-incubator/setup-miniconda@v2.3.0...v3.0.1)

---
updated-dependencies:
- dependency-name: conda-incubator/setup-miniconda
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@ph03
* Cache result of FSStore._fsspec_installed (zarr-developers#1581)
25dbeed 
Prevent runtime-overhead in doing this check multiple times
@dstansby
Bump version of black in pre-commit (zarr-developers#1559)
8579e21
@DimitriPapadopoulos @d-v-b
Use list comprehension where applicable (zarr-developers#1555)
54e31e9 
Even if this is only a test, list comprehensions are faster than
repeatedly call append().

Also use tuple instead of list when possible.

Co-authored-by: Davis Bennett <[email protected]>
@dependabot @jhamman
Bump numcodecs from 0.11.0 to 0.12.1 (zarr-developers#1580)
7d2c9bf 
Bumps [numcodecs](https://github.com/zarr-developers/numcodecs) from 0.11.0 to 0.12.1.
- [Release notes](https://github.com/zarr-developers/numcodecs/releases)
- [Changelog](https://github.com/zarr-developers/numcodecs/blob/main/docs/release.rst)
- [Commits](zarr-developers/numcodecs@v0.11.0...v0.12.1)

---
updated-dependencies:
- dependency-name: numcodecs
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <[email protected]>
@DimitriPapadopoulos @jhamman
Use format specification mini-language to format string (zarr-develop…
10dee6b 
…ers#1558)

Co-authored-by: Joe Hamman <[email protected]>
@DimitriPapadopoulos @d-v-b @jhamman
Single startswith() call instead of multiple ones (zarr-developers#1556)
40a6e81 
It's faster and probably more readable.

Co-authored-by: Davis Bennett <[email protected]>
Co-authored-by: Joe Hamman <[email protected]>
@dependabot @jhamman
Bump pymongo from 4.5.0 to 4.6.1 (zarr-developers#1585)
5954ff9 
Bumps [pymongo](https://github.com/mongodb/mongo-python-driver) from 4.5.0 to 4.6.1.
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](mongodb/mongo-python-driver@4.5.0...4.6.1)

---
updated-dependencies:
- dependency-name: pymongo
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <[email protected]>
@DimitriPapadopoulos
Move codespell options around (zarr-developers#1196)
6ad7b0e 
Starting with codespell 2.2.2, options can be specified in
`pyrpoject.toml` in addition to `setup.cfg`:
https://github.com/codespell-project/codespell#using-a-config-file

Specifying options in a config file instead of command line options in
`.pre-commit-config.yaml` ensures codespell uses the same options when
run as pre-commit hook or from the command line in the repository root
directory.
@dependabot @joshmoore
Bump fsspec from 2023.10.0 to 2023.12.1 (zarr-developers#1600)
cf32382 
* Bump fsspec from 2023.10.0 to 2023.12.1

Bumps [fsspec](https://github.com/fsspec/filesystem_spec) from 2023.10.0 to 2023.12.1.
- [Commits](fsspec/filesystem_spec@2023.10.0...2023.12.1)

---
updated-dependencies:
- dependency-name: fsspec
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>

* Update s3fs as well

* Fix s3fs

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Josh Moore <[email protected]>
@dstansby @d-v-b
Add type hints to zarr.create (zarr-developers#1536)
4d79cfc 
* Add type hints to zarr.create

* Use protocol for MetaArray

* Use protocol for Synchronizer

* Fix Path typing

* Add release note

* Fix dim separator typing

* Ignore ... in coverage reporting

* Fix chunk typing

---------

Co-authored-by: Davis Bennett <[email protected]>
@dstansby @d-v-b
Remove unused mypy ignore comments (zarr-developers#1602)
12abd4e 
Co-authored-by: Davis Bennett <[email protected]>
@dependabot @jhamman
Bump actions/setup-python from 4.7.1 to 5.0.0 (zarr-developers#1605)
c2f5f00 
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4.7.1 to 5.0.0.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](actions/setup-python@v4.7.1...v5.0.0)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <[email protected]>
@dependabot
Bump github/codeql-action from 2 to 3 (zarr-developers#1609)
490e0fe 
Bumps [github/codeql-action](https://github.com/github/codeql-action) from 2 to 3.
- [Release notes](https://github.com/github/codeql-action/releases)
- [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md)
- [Commits](github/codeql-action@v2...v3)

---
updated-dependencies:
- dependency-name: github/codeql-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@pre-commit-ci @joshmoore
chore: update pre-commit hooks (zarr-developers#1448)
b5f79dd 
* chore: update pre-commit hooks

updates:
- https://github.com/charliermarsh/ruff-pre-commit → https://github.com/astral-sh/ruff-pre-commit
- [github.com/astral-sh/ruff-pre-commit: v0.0.224 → v0.1.8](astral-sh/ruff-pre-commit@v0.0.224...v0.1.8)
- [github.com/psf/black: 23.10.1 → 23.12.0](psf/black@23.10.1...23.12.0)
- [github.com/codespell-project/codespell: v2.2.5 → v2.2.6](codespell-project/codespell@v2.2.5...v2.2.6)
- [github.com/pre-commit/pre-commit-hooks: v4.4.0 → v4.5.0](pre-commit/pre-commit-hooks@v4.4.0...v4.5.0)
- [github.com/pre-commit/mirrors-mypy: v1.3.0 → v1.7.1](pre-commit/mirrors-mypy@v1.3.0...v1.7.1)

* Attempt to fix ruff

* Use isinstance

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Josh Moore <[email protected]>
@pre-commit-ci
chore: update pre-commit hooks (zarr-developers#1618)
e09ee14 
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.8 → v0.1.9](astral-sh/ruff-pre-commit@v0.1.8...v0.1.9)
- [github.com/psf/black: 23.12.0 → 23.12.1](psf/black@23.12.0...23.12.1)
- [github.com/pre-commit/mirrors-mypy: v1.7.1 → v1.8.0](pre-commit/mirrors-mypy@v1.7.1...v1.8.0)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@dependabot @jhamman
Bump fsspec from 2023.12.1 to 2023.12.2 (zarr-developers#1606)
cd13989 
* Bump fsspec from 2023.12.1 to 2023.12.2

Bumps [fsspec](https://github.com/fsspec/filesystem_spec) from 2023.12.1 to 2023.12.2.
- [Commits](fsspec/filesystem_spec@2023.12.1...2023.12.2)

---
updated-dependencies:
- dependency-name: fsspec
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>

* Update requirements_dev_optional.txt

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <[email protected]>
@dependabot
Bump pytest-doctestplus from 1.0.0 to 1.1.0 (zarr-developers#1619)
5fb420f 
Bumps [pytest-doctestplus](https://github.com/scientific-python/pytest-doctestplus) from 1.0.0 to 1.1.0.
- [Release notes](https://github.com/scientific-python/pytest-doctestplus/releases)
- [Changelog](https://github.com/scientific-python/pytest-doctestplus/blob/main/CHANGES.rst)
- [Commits](scientific-python/pytest-doctestplus@v1.0.0...v1.1.0)

---
updated-dependencies:
- dependency-name: pytest-doctestplus
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump pytest from 7.4.3 to 7.4.4 (zarr-developers#1622)
435a7ca
@pre-commit-ci
chore: update pre-commit hooks (zarr-developers#1626)
6961fa9 
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.9 → v0.1.11](astral-sh/ruff-pre-commit@v0.1.9...v0.1.11)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@jhamman
Create TEAM.md (zarr-developers#1628)
ee51835
@joshmoore @jhamman @jakirkham
Drop python 3.8 and numpy 1.20 (zarr-developers#1557)
c7d66b4 
* Drop 3.8 and add 3.12

* Try removing line_profiler

* Also bump the minimal numpy to 1.21

* Drop 3.12 again

* Revert "Try removing line_profiler"

This reverts commit 837854b.

* Update release.rst

---------

Co-authored-by: Joe Hamman <[email protected]>
Co-authored-by: jakirkham <[email protected]>
@jhamman
Add Norman Rzepka to core-dev team (zarr-developers#1630)
6ad464b
@pre-commit-ci
chore: update pre-commit hooks (zarr-developers#1633)
a292dc4 
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.11 → v0.1.13](astral-sh/ruff-pre-commit@v0.1.11...v0.1.13)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@dependabot @jhamman @joshmoore
Bump actions/download-artifact from 3 to 4 (zarr-developers#1611)
68c87bb 
* Bump actions/download-artifact from 3 to 4

Bumps [actions/download-artifact](https://github.com/actions/download-artifact) from 3 to 4.
- [Release notes](https://github.com/actions/download-artifact/releases)
- [Commits](actions/download-artifact@v3...v4)

---
updated-dependencies:
- dependency-name: actions/download-artifact
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>

* Also bump upload-artifact

see https://github.com/actions/download-artifact?tab=readme-ov-file#breaking-changes

> Downloading artifacts that were created from action/upload-artifact@v3 and below are not supported.

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <[email protected]>
Co-authored-by: Josh Moore <[email protected]>
@jeffpeck10x @d-v-b @joshmoore
Update tutorial.rst to include section about accessing Zip Files on S3 (
1d56da0 
zarr-developers#1615)

* Update tutorial.rst to include section about accessing Zip Files on S3

Per discussion here, add information about about accessing zip files on s3:
zarr-developers#1613

* Update release.rst

* Implement d-v-b's suggestions

---------

Co-authored-by: Davis Bennett <[email protected]>
Co-authored-by: Josh Moore <[email protected]>
@jhamman @normanrz @MSanKeys963
doc(v3): add v3 roadmap and design document (zarr-developers#1583)
8ac8553 
* doc(v3): add v3 roadmap and design document

* Update v3-roadmap-and-design.md

* updates after latest round of reviews

* Update v3-roadmap-and-design.md

Co-authored-by: Norman Rzepka <[email protected]>

* Update v3-roadmap-and-design.md

Co-authored-by: Sanket Verma <[email protected]>

---------

Co-authored-by: Norman Rzepka <[email protected]>
Co-authored-by: Sanket Verma <[email protected]>
@pre-commit-ci
chore: update pre-commit hooks (zarr-developers#1636)
a81db07 
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.13 → v0.1.14](astral-sh/ruff-pre-commit@v0.1.13...v0.1.14)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@hoodmane @oeway
Fix zarr sync (zarr-developers#1663)
4f2ace4 
This patch removes fasteners and disables zarr.sync which uses process and thread

Co-authored-by: Wei Ouyang <[email protected]>
jhamman and others added 21 commits August 26, 2024 12:56
@jhamman
fix: numpy 1.24 compat for Array.__array__ (zarr-developers#2123)
d1b92b5
@jhamman
Deprecate N5Store (zarr-developers#2103)
2e928b1 
* deprecate(n5): add deprecation warning to N5Store

* also deprecate N5FSStore

* docs

* fix doc
@dstansby
Run tests on numpy 1.23 (zarr-developers#2124)
5bf57bd
@dependabot
Bump the requirements group across 1 directory with 3 updates (zarr-d…
9e0b5e8 
…evelopers#2129)

Bumps the requirements group with 3 updates in the / directory: [numpy](https://github.com/numpy/numpy), [ipywidgets](https://github.com/jupyter-widgets/ipywidgets) and [azure-storage-blob](https://github.com/Azure/azure-sdk-for-python).


Updates `numpy` from 2.0.1 to 2.1.0
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.0.1...v2.1.0)

Updates `ipywidgets` from 8.1.3 to 8.1.5
- [Release notes](https://github.com/jupyter-widgets/ipywidgets/releases)
- [Commits](jupyter-widgets/ipywidgets@8.1.3...8.1.5)

Updates `azure-storage-blob` from 12.16.0 to 12.21.0
- [Release notes](https://github.com/Azure/azure-sdk-for-python/releases)
- [Changelog](https://github.com/Azure/azure-sdk-for-python/blob/main/doc/esrp_release.md)
- [Commits](Azure/azure-sdk-for-python@azure-storage-blob_12.16.0...azure-storage-blob_12.21.0)

---
updated-dependencies:
- dependency-name: numpy
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: requirements
- dependency-name: ipywidgets
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: requirements
- dependency-name: azure-storage-blob
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: requirements
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@jhamman
chore: bump minimum numpy version to 1.24 (zarr-developers#2127)
cc2cdee 
* chore: bump minimum version to 1.24

* Update .github/workflows/python-package.yml
@dstansby
Remove un-needed package installs in CI (zarr-developers#2095)
cb2c669
@dependabot
Bump the actions group with 2 updates (zarr-developers#2146)
6656d1a 
Bumps the actions group with 2 updates: [actions/setup-python](https://github.com/actions/setup-python) and [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).


Updates `actions/setup-python` from 5.1.1 to 5.2.0
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](actions/setup-python@v5.1.1...v5.2.0)

Updates `pypa/gh-action-pypi-publish` from 1.9.0 to 1.10.0
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.9.0...v1.10.0)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: actions
- dependency-name: pypa/gh-action-pypi-publish
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: actions
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump numpy from 2.1.0 to 2.1.1 in the requirements group (zarr-develo…
f1978dd 
…pers#2151)

Bumps the requirements group with 1 update: [numpy](https://github.com/numpy/numpy).


Updates `numpy` from 2.1.0 to 2.1.1
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.1.0...v2.1.1)

---
updated-dependencies:
- dependency-name: numpy
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: requirements
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@jhamman
chore(docs): update release notes ahead of 2.18.4 (zarr-developers#2152)
88b2100
@dependabot
Bump pypa/gh-action-pypi-publish from 1.10.0 to 1.10.1 in the actions…
aa9da2b 
… group (zarr-developers#2161)

Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).


Updates `pypa/gh-action-pypi-publish` from 1.10.0 to 1.10.1
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.10.0...v1.10.1)

---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: actions
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@sneakers-the-rat
[docs] remove primary sidebar from tutorial (zarr-developers#2142)
774f5b1 
* remove primary sidebar from tutorial

* lint
@dependabot
Bump pytest from 8.3.2 to 8.3.3 in the requirements group (zarr-devel…
e1d98cd 
…opers#2172)

Bumps the requirements group with 1 update: [pytest](https://github.com/pytest-dev/pytest).


Updates `pytest` from 8.3.2 to 8.3.3
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@8.3.2...8.3.3)

---
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: requirements
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump pypa/gh-action-pypi-publish in the actions group (zarr-developer…
a011079 
…s#2220)

Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).


Updates `pypa/gh-action-pypi-publish` from 1.10.1 to 1.10.2
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.10.1...v1.10.2)

---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: actions
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@jhamman
Update TEAM.md (zarr-developers#2227)
53f600b
@dependabot
Bump the requirements group across 1 directory with 3 updates (zarr-d…
a9abbe7 
…evelopers#2284)

Bumps the requirements group with 3 updates in the / directory: [redis](https://github.com/redis/redis-py), [pymongo](https://github.com/mongodb/mongo-python-driver) and [h5py](https://github.com/h5py/h5py).


Updates `redis` from 5.0.8 to 5.1.0
- [Release notes](https://github.com/redis/redis-py/releases)
- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)
- [Commits](redis/redis-py@v5.0.8...v5.1.0)

Updates `pymongo` from 4.8.0 to 4.10.0
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](mongodb/mongo-python-driver@4.8.0...4.10.0)

Updates `h5py` from 3.11.0 to 3.12.1
- [Release notes](https://github.com/h5py/h5py/releases)
- [Changelog](https://github.com/h5py/h5py/blob/master/docs/release_guide.rst)
- [Commits](h5py/h5py@3.11.0...3.12.1)

---
updated-dependencies:
- dependency-name: redis
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: requirements
- dependency-name: pymongo
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: requirements
- dependency-name: h5py
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: requirements
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump pymongo from 4.10.0 to 4.10.1 in the requirements group (zarr-de…
559c2e3 
…velopers#2288)

Bumps the requirements group with 1 update: [pymongo](https://github.com/mongodb/mongo-python-driver).


Updates `pymongo` from 4.10.0 to 4.10.1
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](mongodb/mongo-python-driver@4.10.0...4.10.1)

---
updated-dependencies:
- dependency-name: pymongo
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: requirements
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dstansby
Fix low contrast box titles (zarr-developers#2287) (zarr-developers#2292
6b9ab9e 
)
@dependabot
Bump pypa/gh-action-pypi-publish in the actions group (zarr-developer…
f175de4 
…s#2304)

Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).


Updates `pypa/gh-action-pypi-publish` from 1.10.2 to 1.10.3
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.10.2...v1.10.3)

---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: actions
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump the requirements group with 2 updates (zarr-developers#2303)
a1dfd01 
Bumps the requirements group with 2 updates: [numpy](https://github.com/numpy/numpy) and [redis](https://github.com/redis/redis-py).


Updates `numpy` from 2.1.1 to 2.1.2
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.1.1...v2.1.2)

Updates `redis` from 5.1.0 to 5.1.1
- [Release notes](https://github.com/redis/redis-py/releases)
- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)
- [Commits](redis/redis-py@v5.1.0...v5.1.1)

---
updated-dependencies:
- dependency-name: numpy
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: requirements
- dependency-name: redis
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: requirements
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump numcodecs from 0.13.0 to 0.13.1 in the requirements group (zarr-…
eaf5d7a 
…developers#2326)

Bumps the requirements group with 1 update: [numcodecs](https://github.com/zarr-developers/numcodecs).


Updates `numcodecs` from 0.13.0 to 0.13.1
- [Release notes](https://github.com/zarr-developers/numcodecs/releases)
- [Changelog](https://github.com/zarr-developers/numcodecs/blob/main/docs/release.rst)
- [Commits](zarr-developers/numcodecs@v0.13.0...v0.13.1)

---
updated-dependencies:
- dependency-name: numcodecs
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: requirements
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@jhamman
Merge remote-tracking branch 'upstream/main' into v3-main-sync
acd6655
@jhamman jhamman changed the title V3 main sync V3<> main sync Oct 10, 2024
@jhamman jhamman mentioned this pull request Oct 10, 2024
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@dstansby
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dstansby commented Oct 11, 2024 •
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Since it doesn't look like this changes any files, is there a benefit to doing this that I'm missing?

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I was also a bit confused by that. It might be that there were enough changes that -s ours is simply too big a hammer. It might require finding changes that should be preserved and hand-merging them.

@jhamman jhamman mentioned this pull request Oct 11, 2024
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jhamman commented Oct 11, 2024

Closing in favor of #2335

@jhamman jhamman closed this Oct 11, 2024
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