Merge pull request #12 from wtsi-npg/dependabot/pip/cryptography-43.0.3 #28

	name: Test

	on:
	push:
	branches: [master, devel]
	pull_request:
	branches: [master, devel]

	jobs:

	test:
	runs-on: ubuntu-latest

	services:
	mysql:
	image: "mysql:8.0"
	ports:
	- "3306:3306"
	options: >-
	--health-cmd "mysqladmin ping"
	--health-interval 10s
	--health-timeout 5s
	--health-retries 10
	env:
	MYSQL_RANDOM_ROOT_PASSWORD: yes
	MYSQL_TCP_PORT: 3306
	MYSQL_USER: "test"
	MYSQL_PASSWORD: "test"
	MYSQL_DATABASE: "study_notify"

	porch:
	image: "ghcr.io/wtsi-npg/python-3.10-npg-porch-2.0.0"
	ports:
	- "8081:8081"
	options: >-
	--health-cmd "curl -f http://localhost:8081"
	--health-interval 10s
	--health-timeout 5s
	--health-retries 10

	steps:
	- uses: actions/checkout@v4

	- name: Install Poetry
	run: \|
	pipx install poetry

	- uses: actions/setup-python@v5
	with:
	python-version: '3.11'
	architecture: 'x64'

	- name: Run poetry install
	run: \|
	poetry env use '3.11'
	poetry install

	- name: Run pytest
	run: \|
	poetry run pytest

	- name: Run linter (ruff)
	run: \|
	poetry run ruff check --output-format=github .

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