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Figure 2. Molecular phylogenies of PpCF and HLP
Figure 2. Molecular phylogenies of PpCF and HLP
 
 
Figure S10. Overview of the phylogenetic relationships of 27 HET domain-containing genes in P. patens.
Figure S10. Overview of the phylogenetic relationships of 27 HET domain-containing genes in P. patens.
 
 
Figure S11. Molecular phylogeny of a subset of HET domain-containing proteins in P. patens.
Figure S11. Molecular phylogeny of a subset of HET domain-containing proteins in P. patens.
 
 
Figure S12. Molecular phylogenies of five HET domain-containing genes in FR1 (A) and FR2 (B)
Figure S12. Molecular phylogenies of five HET domain-containing genes in FR1 (A) and FR2 (B)
 
 
Figure S14. Phylogenetic tree, expression profile and domain structures of 27 HET domain-containing proteins in P. patens.
Figure S14. Phylogenetic tree, expression profile and domain structures of 27 HET domain-containing proteins in P. patens.
 
 
Figure S15. Phylogenetic tree and expression profile of 27 HET domain-containing genes in P. patens.
Figure S15. Phylogenetic tree and expression profile of 27 HET domain-containing genes in P. patens.
 
 
Figure S2-S4. TE_tree
Figure S2-S4. TE_tree
 
 
Figure S7. gene distrubtion in three mosses genome fragment
Figure S7. gene distrubtion in three mosses genome fragment
 
 
Figure S8. Mapping view and depth statistics of the contig that contains CF, HLP and HET domain-containing proteins in Physcomitrium sp.
Figure S8. Mapping view and depth statistics of the contig that contains CF, HLP and HET domain-containing proteins in Physcomitrium sp.
 
 
Table S2.List of additional genomes and transcriptomes used in this study
Table S2.List of additional genomes and transcriptomes used in this study
 
 
Table S5. PCR and sequencing
Table S5. PCR and sequencing
 
 
others/nucmer_FR1_FR2
others/nucmer_FR1_FR2
 
 
script
script
 
 
README.md
README.md
 
 

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File Type Explain

*fa: raw sequence file, fasta format
*cut.fas: alignment file after manual trim
*.fas: alignment by Muscle
*nwk or *fasttree: Phylogenetic Tree Original file
*eps: EPS format picture, can be viewed or edited with Adobe Illustrator
evalue.xlsx: Usually store evalue information, which can be viewed or edited with Microsoft Excel
rename.txt: The correspondence between sequence names in alignment files and sequence names in phylogenetic tree files

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