Discussions

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  online-tool is not working anymore!

  XC-DE started Oct 2, 2024 in Troubleshooting · Closed

  

  

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  Report images and files not appearing in windows

  kclem started Sep 25, 2024 in Troubleshooting

  

  

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  This error is The specified file 'allele_specific.fastq.gz' cannot be opened.

  yunhu-HY asked Aug 12, 2024 in Q&A · Answered

  

  

  

  

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  HTML report tabs: some of the tabs do not work if your amplicon name starts with a number

  rktmm started Aug 28, 2024 in General

  

  

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  Differences between allele frequency table and allele frequency table around gRNA

  DemonofLaplace asked Aug 13, 2024 in Q&A · Unanswered

  

  

  

  

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  RNA-seq

  nikbaya started Jul 19, 2024 in General

  

  

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  Low number of reads aligned

  Frances-24 asked Jul 3, 2024 in Q&A · Answered

  

  

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  Analyzing ambiguous alignments

  kclem started Dec 20, 2022 in Troubleshooting

  

  

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  CRISPRessoPooled output: fastq.gz files, one for each allele of each amplicon?

  GreenSeaBug asked May 15, 2024 in Q&A · Unanswered

  

  

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  CRISPResso mapping reads to wrong allele

  GreenSeaBug started Apr 3, 2024 in General

  

  

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  Targeting Minato

  kclem announced Apr 11, 2024 in Releases

  

  

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  CRISPResso2 mapping read to wrong allele

  GreenSeaBug started Mar 19, 2024 in Troubleshooting

  

  

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  How does CRISPResso2 handle deletions between two gRNAs

  GreenSeaBug started Mar 6, 2024 in General

  

  

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  Prime Editing Plot

  rehman220 started Feb 2, 2024 in General · Closed

  

  

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  Why are the allele percentages in my Allele Plot different than the values in the accompanying Allele Table?

  kclem started Jan 26, 2024 in Troubleshooting

  

  

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  Unable to merge paired reads in batch mode

  sharagyaltshen started Aug 3, 2022 in Troubleshooting

  

  

  

  

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  Different outputs from Pooled vs individual amplicon analysis

  danjpri started Dec 14, 2023 in Troubleshooting

  

  

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  Multiple allele analysis

  YoavLub asked Dec 12, 2023 in Q&A · Unanswered

  

  

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  Using "non-standard" Nucleotide Codes for Reference Sequence

  ddhingani started Nov 29, 2023 in General

  

  

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  Question about Discarded field in SAMPLES_QUANTIFICATION_SUMMARY.txt file for CRISPRessoPooled

  mbiokyle29 started Nov 13, 2023 in Troubleshooting

  

  

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  Example analysis of PASTE

  kclem started Feb 11, 2022 in Show and tell

  

  

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  Error 502 Bad Gateway when accessing CRISPResso2

  sheynechoi started Oct 19, 2023 in General

  

  

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  Differentiate editing efficiency of 2 guides used simultaneously

  enhancement New feature or request

  JennyKou asked Oct 11, 2023 in Q&A · Closed · Answered

  

  

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  %modified reads of sample differs between simple and batch mode

  JennyKou asked Sep 7, 2023 in Q&A · Closed · Unanswered

  

  

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  Granular read analysis using --fastq_output

  kclem started Aug 30, 2023 in Troubleshooting

  

  

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