Targeting Minato

[kclem]

Targeting Minato v2.3.0

Major changes:

• Flash and Trimmomatic are replaced with Fastp by @trevormartinj7, @Snicker7, and @Colelyman
• Guardrails (checking experimental conditions and raising warnings) by @Snicker7
• Failed runs are displayed with the error by @trevormartinj7

Minor changes:

• Replace link to CRISPResso schematic with raw URL in README by @Colelyman in Replace link to CRISPResso schematic with raw URL in README #329
• Fix samtools piping by @Colelyman in Fix samtools piping #325
• Prime editing alignment params by @kclem in Prime editing alignment params #336
• Fix for recent Matplotlib v3.8 by @mbowcut2 in Fix for recent Matplotlib v3.8 #346
• Enable quantification by sgRNA by @kclem in Enable quantification by sgRNA #348
• Fix Matplotlib breaking change issue by @mbowcut2 in Fix Matplotlib breaking change issue #352
• Fix assigning multiple qwc by @Snicker7 in Fix assigning multiple qwc #375
• Run unit tests via Github Actions and fix matplotlib character issue by @Snicker7 and @mbowcut2 in Run unit tests via Github Actions and fix matplotlib character issue #386
• Remove future Pandas warnings and sort CRISPRessoCompare tables by @mbowcut2 and @Snicker7 in Remove future Pandas warnings and sort CRISPRessoCompare tables #389
• Fix interleaved fastq input in CRISPRessoPooled and suppress CRISPRessoWGS params by @Colelyman in Fix interleaved fastq input in CRISPRessoPooled and suppress CRISPRessoWGS params #392
• Fix ERROR: 264 columns passed, passed data had 265 columns - Prime Editing #367, reads only align to prime edited amplicon, not to reference by @mbowcut2 in Fix #367, reads only align to prime edited amplicon, not to reference #393
• Run integration tests on every push by @Snicker7 in Run integration tests on every push #394
• Move read filtering to after merging in CRISPResso by @Colelyman in Move read filtering to after merging in CRISPResso #397
• Fix the assignment of multiple quantification window coordinates by @Snicker7 in Fix the assignment of multiple quantification window coordinates #403
• Decrease Docker image size and fix PE naming and parameter behavior by @Colelyman, @Snicker7 and @mbowcut2 in Decrease Docker image size and fix PE naming and parameter behavior #404
• fix space character in README by @DennyDai in fix space character in README #400
• Fix Jinja2 undefined variables by @Colelyman in Fix Jinja2 undefined variables #417
  Full Changelog: v2.2.14...v2.3.0

---

This discussion was created from the release Targeting Minato.