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    16 repositories

    • starfinder

      Public
      Customized snakemake workflow for computational image processing
      Jupyter Notebook
      •
      MIT License
      •0•1•1•0•Updated Nov 18, 2024Nov 18, 2024

    • probe-design

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Nov 6, 2024Nov 6, 2024

    • CAST

      Public
      CAST package
      Python
      •
      MIT License
      •3•25•0•0•Updated Oct 26, 2024Oct 26, 2024

    • harmonics

      Public
      Harmonic analysis of spatial transcriptomics data
      Python
      •
      MIT License
      •0•1•0•0•Updated Sep 30, 2024Sep 30, 2024

    • hepatic_recon

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Sep 30, 2024Sep 30, 2024

    • spin

      Public
      SPatial INtegration of spatially resolved transcriptomics datasets
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•13•1•0•Updated Sep 12, 2024Sep 12, 2024

    • starmap-matlab

      Public
      MATLAB
      •
      MIT License
      •1•1•0•0•Updated Aug 27, 2024Aug 27, 2024

    • ClusterMap

      Public
      ClusterMap for multi-scale clustering analysis of spatial gene expression
      bioinformaticstranscriptomicscell-segmentationsingle-cell-analysisspatial-transcriptomicsin-situ-sequencingspatial-omics
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •11•41•5•0•Updated Jul 20, 2024Jul 20, 2024

    • Multicap-analysis

      Public
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Jun 24, 2024Jun 24, 2024

    • .github

      Public
      Organization profile
      0•0•0•0•Updated Jun 20, 2024Jun 20, 2024

    • mCNS-atlas

      Public
      Jupyter Notebook
      •4•17•3•0•Updated Mar 31, 2024Mar 31, 2024

    • RIBOmap-analysis

      Public
      Jupyter Notebook
      •1•3•0•0•Updated Nov 14, 2023Nov 14, 2023

    • mAD-analysis

      Public
      Jupyter Notebook
      •
      MIT License
      •3•2•0•0•Updated Nov 13, 2023Nov 13, 2023

    • starmap-py

      Public
      Python
      •
      MIT License
      •0•1•0•0•Updated Aug 17, 2023Aug 17, 2023

    • TEMPOmap

      Public
      This repository contains scripts for TEMPOmap.
      Jupyter Notebook
      •3•5•0•0•Updated Apr 12, 2023Apr 12, 2023

    • rna-therapeutic

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Nov 12, 2021Nov 12, 2021