RIBOmap

This repository contains scripts for the 'Spatially Resolved Single-cell Translatomics at Molecular Resolution'.

1. HeLa cell culture data analysis (preprocessing, cell cycle, co-expression, and co-localization)
2. Mouse brain tissue section analysis (preprocessing, tissue region segmentation, cell clustering, analysis, and visualization)

Please refer to the README.md files under each subfolder for more detailed information.

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Other Info

Citation

Please cite our paper if you find our work useful.:

Zeng, H., Huang, J., Ren, J., Wang, C.K., Tang, Z., Zhou, H., Zhou, Y., Shi, H., Aditham, A., Sui, X. and Chen, H., 2023. Spatially resolved single-cell translatomics at molecular resolution. Science, 380(6652), p.eadd3067.

Related Dataset

The related datasets can be found:

1. Single Cell Portal
2. Zenodo - Gene expression dataset
3. Zenodo - Processed image dataset

• Please use the most recent version of the dataset.

Contact

Contact us at [email protected] if you have any issues.

Contributor

Jiahao Huang, Kangni (Connie) Wang, Zefang Tang, Rena Ren, Hu Zeng