Repositories list

• nano_diagnositcs

  Public
  Documentation of analyses and commands used as part of the PhD project investigating next generation diagnostics

  R

  •3•0•0•0•Updated Sep 27, 2024Sep 27, 2024

• pichia

  Public
  commands used in the assembly and annotation of Pichia genomes

  Shell

  •0•0•0•0•Updated Jun 14, 2022Jun 14, 2022

• bioinformatics_tools

  Public
  Tools used in the analysis of high-throughput sequencing data

  Python

  •5•8•0•0•Updated Apr 22, 2022Apr 22, 2022

• fusarium_species

  Public
  Analysis of fusarium species and F. oxysporum species complex

  0•0•0•0•Updated Apr 20, 2022Apr 20, 2022

• hop_genomics

  Public
  Shell

  •0•2•0•0•Updated Apr 14, 2022Apr 14, 2022

• fusarium_venenatum

  Public
  Bioinformatic analysis of fusarium venenatum genomes

  Python

  •2•2•1•0•Updated Apr 14, 2022Apr 14, 2022

• neonectria_ditissima

  Public
  Scripts used during analysis of neonectria_ditissima genomes.

  Python

  •1•3•0•0•Updated Apr 14, 2022Apr 14, 2022

• powdery_mildew_resistance

  Public
  Documentation of analyses and commands used as part of the PhD project investigating powdery mildew on strawberry

  0•0•0•0•Updated Apr 7, 2022Apr 7, 2022

• verticillium_clocks

  Public
  Documentation of identification of clock genes in verticillium genomes

  Python

  •1•0•0•0•Updated Mar 24, 2022Mar 24, 2022

• pipeline_canker_cherry

  Public
  The pipeline to analyse genomic sequences for hunting effectors associated with canker in cherry.

  effectorsbioinformaticspipeline

  Shell

  •1•0•0•0•Updated Mar 21, 2022Mar 21, 2022

• turnip_yellows

  Public
  0•0•0•0•Updated Mar 10, 2022Mar 10, 2022

• Metabarcoding_projects

  Public
  Metabarcoding projects

  metagenomicsswdmetabarcoding+ 1ard

  R

  •3•1•0•0•Updated Feb 24, 2022Feb 24, 2022

• ENSA

  Public
  Shell

  •0•0•0•0•Updated Nov 25, 2021Nov 25, 2021

• selective_seq

  Public
  Selective sequencing analyses

  0•0•0•0•Updated Oct 8, 2021Oct 8, 2021

• fusarium_ex_strawberry

  Public
  Commands used in the analysis of Fusarium oxysporum isolates ex. strawberry.

  Shell

  •0•1•0•0•Updated Aug 17, 2021Aug 17, 2021

• Fv_C-variants

  Public
  Detection SNPs leading to branching variants of Fv

  Shell

  •1•0•0•0•Updated May 12, 2021May 12, 2021

• pseudomonas

  Public
  Perl

  •2•7•0•0•Updated Oct 8, 2020Oct 8, 2020

• alternaria

  Public
  Scripts used for the analysis of Alternaria genomes

  Python

  •1•3•0•0•Updated Jul 24, 2020Jul 24, 2020

• fusarium

  Public
  Fusarium Genomics

  Python

  •1•3•0•0•Updated Jul 3, 2020Jul 3, 2020

• phytophthora

  Public
  Scripts used in the analysis of Phytophthora genomes

  Python

  •4•5•0•0•Updated Apr 6, 2020Apr 6, 2020

• verticillium_pathogenomics

  Public
  Documentation of identification of pathogenicity genes in verticillium

  Python

  •1•1•0•0•Updated Feb 18, 2020Feb 18, 2020

• venturia_inaequalis

  Public
  command for analysis of venturia genomes

  Shell

  •0•1•0•0•Updated Feb 18, 2020Feb 18, 2020

• SWD

  Public
  Commands used in the assembly and annotation of Drosophila suzukii

  Shell

  •0•0•0•0•Updated Feb 18, 2020Feb 18, 2020

• strawberry_substrate_QTL

  Public
  Commands used to identify gene models in regions containing identified QTL associated with phenotypic response to soil substrates

  Python

  •0•0•0•0•Updated Feb 18, 2020Feb 18, 2020

• strawberry_crispr

  Public
  Commands to investigate crispr edits on strabwerry

  Shell

  •0•0•0•0•Updated Feb 18, 2020Feb 18, 2020

• Nectria_haematococca

  Public
  Commands for the analysis of Nectria haematococca (F. solani) ex. pea genomes.

  0•0•0•0•Updated Feb 18, 2020Feb 18, 2020

• Didymella

  Public
  Commands used in the assembly and analysis of Didymella genomes

  MIT License

  •0•0•0•0•Updated Feb 18, 2020Feb 18, 2020

• colletotrichum_gloeosporioides

  Public
  Commands used in the analysis of Colletotrichum Gleosporoides genomes

  0•0•0•0•Updated Feb 18, 2020Feb 18, 2020

• fusarium_ampseq

  Public
  Commands used in analysis of amplicon sequence data of Fusarium infested soil samples and artificial mixes.

  R

  •0•0•0•0•Updated Feb 18, 2020Feb 18, 2020

• phytophthora_fragariae

  Public
  Commands used in the analysis of P. fragariae genomes

  Python

  •5•3•0•0•Updated Feb 2, 2020Feb 2, 2020