fusarium_species

Analysis of fusarium species and F. oxysporum species complex

AA old repositories and directories on NIAB HPC

fusarium

Old fusarium species folder

https://github.com/harrisonlab/fusarium

ls /projects/oldhome/groups/harrisonlab/project_files/fusarium/qc_dna/paired

# F.avenaceum strains: L5  PG8
# F.oxysporum strain: Stocks4
# F.oxysporum_fsp_cepae strains: 125  55  A1-2  A13  A23  A28  AF064  CB3  CH5-2  D2  Fus2  HB17  HB6  PG
# F.oxysporum_fsp_fragariae strains: 15-074  Straw465
# F.oxysporum_fsp_lactucae strains: AJ516  AJ520
# F.oxysporum_fsp_narcissi strains: FON129  FON_63  FON77  FON81  FON89  N139
# F.oxysporum_fsp_pisi strains: F81  FOP1  FOP1-EMR  FOP2  FOP5  PG18  PG3  R2
# F.oxysporum_fsp_statice strains: Stat10
# F.proliferatum strains: A8

Aditional repositories

For reference only. These fsp are included in the fusarium folder and data here might be duplicated.

fusarium_ex_narcissus

https://github.com/harrisonlab/Fusarium_ex_narcissus

# Strains: FON129  FON139  FON77  FON81  FON89
/projects/oldhome/groups/harrisonlab/project_files/fusarium_ex_narcissus

fusarium_ex_pea

https://github.com/harrisonlab/fusarium_ex_pea

# Strains: F81  FOP1  FOP1-EMR  FOP2  FOP5  PG18  PG3  R2
/projects/oldhome/groups/harrisonlab/project_files/fusarium_ex_pea
/projects/oldhome/groups/harrisonlab/project_files/fusarium_pea # Duplicated data

fusarium_ex_strawberry_ning_2015

https://github.com/harrisonlab/fusarium_ex_strawberry/tree/4befcad95f41e0c1b48a524f712856d2ebf8e4cc/ning

#Strain: FeChina
/projects/oldhome/groups/harrisonlab/project_files/fusarium_ex_strawberry_ning_2015

AG new repository

New analysis can be added to this one https://github.com/harrisonlab/fusarium_species

Directories

# New directory on NIAB HPC for storage
/projects/fusarium_species/
# Working directory on Crop Diversity
/home/agomez/scratch/fusarium_species