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Merge pull request #10610 from obophenotype/issue_9762
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Update and close #9762
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@LCCarmody
LCCarmody authored Jul 3, 2024
2 parents 78c845f + eb5895c commit 97678f5
Showing 1 changed file with 15 additions and 3 deletions.
18 changes: 15 additions & 3 deletions src/ontology/hp-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -19234,6 +19234,9 @@ Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000895>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000896>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000897>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000898>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0001842>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0001843>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0001844>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0014932>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_1000009>))
Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/HP_0034334>))
Expand Down Expand Up @@ -19403,7 +19406,7 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://pu
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#shorthand> <http://purl.obolibrary.org/obo/BFO_0000050> "part_of")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/BFO_0000050> "part of")

# Object Property: <http://purl.obolibrary.org/obo/BFO_0000051> (has_part)
# Object Property: <http://purl.obolibrary.org/obo/BFO_0000051> (has part)

AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/BFO_0000051> "BFO:0000051")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/BFO_0000051> "has_part")
Expand Down Expand Up @@ -24203,7 +24206,7 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynony
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/HP_0000402> "HP:0000402")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/HP_0000402> <http://purl.obolibrary.org/obo/hp#hposlim_core>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0000402> "Stenosis of the external auditory canal")
EquivalentClasses(<http://purl.obolibrary.org/obo/HP_0000402> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000599> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/UBERON_0001352>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
EquivalentClasses(<http://purl.obolibrary.org/obo/HP_0000402> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001847> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/UBERON_0001352>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
SubClassOf(<http://purl.obolibrary.org/obo/HP_0000402> <http://purl.obolibrary.org/obo/HP_0000372>)

# Class: <http://purl.obolibrary.org/obo/HP_0000403> (Recurrent otitis media)
Expand Down Expand Up @@ -87663,7 +87666,7 @@ SubClassOf(<http://purl.obolibrary.org/obo/HP_0008711> <http://purl.obolibrary.o
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/HP_0008714> "UMLS:C4024633")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/HP_0008714> "HP:0008714")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0008714> "Ureterovesical stenosis")
EquivalentClasses(<http://purl.obolibrary.org/obo/HP_0008714> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000599> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/UBERON_0009973>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
EquivalentClasses(<http://purl.obolibrary.org/obo/HP_0008714> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001847> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/UBERON_0009973>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
SubClassOf(<http://purl.obolibrary.org/obo/HP_0008714> <http://purl.obolibrary.org/obo/HP_0000071>)

# Class: <http://purl.obolibrary.org/obo/HP_0008715> (Testicular dysgenesis)
Expand Down Expand Up @@ -110098,6 +110101,7 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <ht
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_0010644> "Midnasal atresia or stenosis")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/HP_0010644> "HP:0010644")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0010644> "Midnasal stenosis")
EquivalentClasses(<http://purl.obolibrary.org/obo/HP_0010644> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001847> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/UBERON_0004110>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
SubClassOf(<http://purl.obolibrary.org/obo/HP_0010644> <http://purl.obolibrary.org/obo/HP_0010641>)

# Class: <http://purl.obolibrary.org/obo/HP_0010645> (Aplasia of the distal phalanges of the toes)
Expand Down Expand Up @@ -133446,6 +133450,7 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <ht
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <https://orcid.org/0000-0001-5208-3432>) Annotation(<http://www.geneontology.org/formats/oboInOwl#hasSynonymType> <http://purl.obolibrary.org/obo/hp#layperson>) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_0012492> "Narrowing of a cerebral artery")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/HP_0012492> "HP:0012492")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0012492> "Cerebral artery stenosis")
EquivalentClasses(<http://purl.obolibrary.org/obo/HP_0012492> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001847> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/UBERON_0004449>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
SubClassOf(<http://purl.obolibrary.org/obo/HP_0012492> <http://purl.obolibrary.org/obo/HP_0009145>)

# Class: <http://purl.obolibrary.org/obo/HP_0012493> (Middle cerebral artery stenosis)
Expand Down Expand Up @@ -137803,6 +137808,7 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <ht
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <https://orcid.org/0000-0001-5208-3432>) Annotation(<http://www.geneontology.org/formats/oboInOwl#hasSynonymType> <http://purl.obolibrary.org/obo/hp#layperson>) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_0012848> "Narrowing of small intestine")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/HP_0012848> "HP:0012848")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0012848> "Small intestinal stenosis")
EquivalentClasses(<http://purl.obolibrary.org/obo/HP_0012848> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001847> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/UBERON_0002108>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
SubClassOf(<http://purl.obolibrary.org/obo/HP_0012848> <http://purl.obolibrary.org/obo/HP_0002244>)

# Class: <http://purl.obolibrary.org/obo/HP_0012849> (Small intestinal bleeding)
Expand Down Expand Up @@ -137846,6 +137852,7 @@ AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#has
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_0012851> "Stenosis of the colon")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/HP_0012851> "HP:0012851")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0012851> "Colonic stenosis")
EquivalentClasses(<http://purl.obolibrary.org/obo/HP_0012851> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001847> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/UBERON_0001155>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
SubClassOf(<http://purl.obolibrary.org/obo/HP_0012851> <http://purl.obolibrary.org/obo/HP_0002250>)

# Class: <http://purl.obolibrary.org/obo/HP_0012852> (Hepatic bridging fibrosis)
Expand Down Expand Up @@ -145026,6 +145033,7 @@ AnnotationAssertion(dc:date <http://purl.obolibrary.org/obo/HP_0025491> "2017-05
AnnotationAssertion(dcterms:creator <http://purl.obolibrary.org/obo/HP_0025491> <https://orcid.org/0000-0002-0736-9199>)
AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/HP_0025491> "Venous stenosis can be secondary to placement of central venous catheters, pacemaker leads, hemodialysis catheters, prior radiation, trauma, or extrinsic compression by musculoskeletal structures.")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0025491> "Venous stenosis")
EquivalentClasses(<http://purl.obolibrary.org/obo/HP_0025491> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001847> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/UBERON_0001638>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
SubClassOf(<http://purl.obolibrary.org/obo/HP_0025491> <http://purl.obolibrary.org/obo/HP_0002624>)

# Class: <http://purl.obolibrary.org/obo/HP_0025492> (Microcoria)
Expand Down Expand Up @@ -164439,6 +164447,7 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynony
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_0032077> "Meatus stenosis")
AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/HP_0032077> "If the sex is not indicated, meatal stenosis is generally taken to refer to males, and thus we list this term as an exact synonym.")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0032077> "Male urethral meatus stenosis")
EquivalentClasses(<http://purl.obolibrary.org/obo/HP_0032077> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001847> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/UBERON_0012241>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
SubClassOf(<http://purl.obolibrary.org/obo/HP_0032077> <http://purl.obolibrary.org/obo/HP_0008661>)
SubClassOf(<http://purl.obolibrary.org/obo/HP_0032077> <http://purl.obolibrary.org/obo/HP_0032076>)

Expand Down Expand Up @@ -191198,6 +191207,7 @@ AnnotationAssertion(dcterms:creator <http://purl.obolibrary.org/obo/HP_0040118>
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/HP_0040118> "SNOMEDCT_US:80101003")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/HP_0040118> "UMLS:C0271469")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0040118> "Stenosis of the Eustachian tube")
EquivalentClasses(<http://purl.obolibrary.org/obo/HP_0040118> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001847> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/UBERON_0002393>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
SubClassOf(<http://purl.obolibrary.org/obo/HP_0040118> <http://purl.obolibrary.org/obo/HP_0040115>)

# Class: <http://purl.obolibrary.org/obo/HP_0040119> (Unilateral conductive hearing impairment)
Expand Down Expand Up @@ -198459,6 +198469,7 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#creation_date>
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/HP_0100254> "UMLS:C4022179")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/HP_0100254> "HP:0100254")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0100254> "Stenosis of the medullary cavity of the long bones")
EquivalentClasses(<http://purl.obolibrary.org/obo/HP_0100254> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001847> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/UBERON_0016413>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
SubClassOf(<http://purl.obolibrary.org/obo/HP_0100254> <http://purl.obolibrary.org/obo/HP_0100253>)

# Class: <http://purl.obolibrary.org/obo/HP_0100255> (Metaphyseal dysplasia)
Expand Down Expand Up @@ -201882,6 +201893,7 @@ AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#has
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/HP_0100546> "HP:0100546")
AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/HP_0100546> "Carotid artery stenosis is usually caused by caused by atherosclerosis.")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0100546> "Carotid artery stenosis")
EquivalentClasses(<http://purl.obolibrary.org/obo/HP_0100546> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001847> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/UBERON_0005396>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
SubClassOf(<http://purl.obolibrary.org/obo/HP_0100546> <http://purl.obolibrary.org/obo/HP_0005344>)
SubClassOf(<http://purl.obolibrary.org/obo/HP_0100546> <http://purl.obolibrary.org/obo/HP_0100545>)

Expand Down

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