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Update release pipeline script
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Making ODK version configurable in release pipeline and making sure it is always up to date.
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matentzn committed Jul 2, 2024
1 parent 2abe419 commit 78c845f
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Showing 2 changed files with 19 additions and 5 deletions.
12 changes: 11 additions & 1 deletion .gitignore
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Expand Up @@ -100,4 +100,14 @@ src/translations/hp-tw-not-translated.babelon.tsv
hp-fr.obo
hp-fr.json
hp-fr.owl
src/ontology/imports/.Rhistory
src/ontology/imports/.Rhistory
src/ontology/reports/hpodiff_hp_2022-12-15_to_hp_2022-12-15.xlsx
src/ontology/reports/hpodiff_hp_2022-12-15_to_hp_2023-01-20.xlsx
src/ontology/reports/hpodiff_hp_2023-01-27_to_hp_2023-03-31.xlsx
src/ontology/reports/hpodiff_hp_2023-04-05_to_hp_2023-06-05.xlsx
src/ontology/reports/hpodiff_hp_2023-06-06_to_hp_2023-06-16.xlsx
src/ontology/reports/hpodiff_hp_2023-06-17_to_hp_2023-07-20.xlsx
src/ontology/reports/hpodiff_hp_2023-06-17_to_hp_2023-07-21.xlsx
src/ontology/reports/hpodiff_hp_2024-04-19_to_hp_2024-04-24.xlsx
src/ontology/reports/hpodiff_hp_2024-04-26_to_hp_2024-05-10.xlsx
src/ontology/reports/hpodiff_hp_2024-06-25_to_hp_2024-06-28.xlsx
12 changes: 8 additions & 4 deletions src/ontology/build-without-imports.sh
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Expand Up @@ -2,8 +2,12 @@

set -e

sh run.sh make hpoa_clean -B
ODK=v1.5.2

echo docker pull obolibrary/odkfull:$ODK

ODK_TAG=$ODK sh run.sh make hpoa_clean -B
test -f tmp/hpo-annotation-data/README.md
sh run.sh make MIR=false IMP=false prepare_release -B
sh run.sh make hpoa -B
sh run.sh make hpo_diff -B
ODK_TAG=$ODK sh run.sh make MIR=false IMP=false prepare_release -B
ODK_TAG=$ODK sh run.sh make hpoa -B
ODK_TAG=$ODK sh run.sh make hpo_diff -B

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