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Addresses #2119 NTR perivascular cell #2120

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merged 3 commits into from
Aug 23, 2023
Merged

Addresses #2119 NTR perivascular cell #2120

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349a05d
Addresses #2119 NTR perivascular cell
aleixpuigb Aug 22, 2023
7d94330
Fix grammar error
aleixpuigb Aug 23, 2023
acdb1b3
Improve definition
aleixpuigb Aug 23, 2023
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12 changes: 12 additions & 0 deletions src/ontology/cl-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -2992,6 +2992,7 @@ Declaration(Class(obo:CL_4033050))
Declaration(Class(obo:CL_4033051))
Declaration(Class(obo:CL_4033052))
Declaration(Class(obo:CL_4033053))
Declaration(Class(obo:CL_4033054))
Declaration(Class(obo:CL_4040000))
Declaration(Class(obo:CL_4040001))
Declaration(Class(obo:CL_4040002))
Expand Down Expand Up @@ -6560,6 +6561,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000359 "vascular smooth mus
AnnotationAssertion(rdfs:label obo:CL_0000359 "vascular associated smooth muscle cell")
EquivalentClasses(obo:CL_0000359 ObjectIntersectionOf(obo:CL_0000192 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002049)))
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000359 obo:CL_0000192)
SubClassOf(obo:CL_0000359 obo:CL_4033054)

# Class: obo:CL_0000360 (morula cell)

Expand Down Expand Up @@ -11354,6 +11356,7 @@ AnnotationAssertion(rdfs:comment obo:CL_0000881 "Markers: Human/monkey, mice: CD
AnnotationAssertion(rdfs:label obo:CL_0000881 "perivascular macrophage")
EquivalentClasses(obo:CL_0000881 ObjectIntersectionOf(obo:CL_0000878 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001981) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001483) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001889) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001925)))
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000881 obo:CL_0000878)
SubClassOf(obo:CL_0000881 obo:CL_4033054)

# Class: obo:CL_0000882 (thymic medullary macrophage)

Expand Down Expand Up @@ -22629,6 +22632,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0008034 <http://purl.obolibrary.org
AnnotationAssertion(rdfs:label obo:CL_0008034 "mural cell"@en)
SubClassOf(obo:CL_0008034 obo:CL_0000548)
SubClassOf(obo:CL_0008034 obo:CL_0002371)
SubClassOf(obo:CL_0008034 obo:CL_4033054)

# Class: obo:CL_0008035 (microcirculation associated smooth muscle cell)

Expand Down Expand Up @@ -31843,6 +31847,14 @@ AnnotationAssertion(rdfs:label obo:CL_4033053 "small bistratified retinal gangli
SubClassOf(obo:CL_4033053 obo:CL_0003001)
SubClassOf(obo:CL_4033053 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001792))

# Class: obo:CL_4033054 (perivascular cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:24928499") Annotation(oboInOwl:hasDbXref "PMID:27889329") obo:IAO_0000115 obo:CL_4033054 "A cell that is adjacent to a vessel. A perivascular cell plays a crucial role in maintaining vascular function and tissue homeostasis. This cell type regulates vessel integrity and flow dynamics.")
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Consider editing last sentence to: This cell type regulates vessel integrity and flow dynamics.

Will approve PR and leave this edit to your discretion.

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Thank you for the suggestion, I will add it now.

AnnotationAssertion(<http://purl.org/dc/terms/contributor> obo:CL_4033054 <https://orcid.org/0000-0001-6677-8489>)
AnnotationAssertion(<http://purl.org/dc/terms/date> obo:CL_4033054 "2023-08-22T13:40:28Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label obo:CL_4033054 "perivascular cell")
EquivalentClasses(obo:CL_4033054 ObjectIntersectionOf(obo:CL_0000003 ObjectSomeValuesFrom(obo:RO_0002220 obo:UBERON_0002049)))

# Class: obo:CL_4040000 (glial restricted tripotential precursor cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:10719353") obo:IAO_0000115 obo:CL_4040000 "A glial precursor cell that generates oligodendrocytes and type-1 and type-2 astrocytes. It has been shown in some mammals that this cell type may express A2B5, nestin, FGFR-1, FGFR-2, FGFR-3, PLP, and DM-20 antigens. Unlike oligodendrocyte precursor cell, it does not initially express PDGFR-alpha and can differentiate into both type-1 and type-2 astrocytes.")
Expand Down