Make kgx tsv

[hrshdhgd]

No description provided.

[caufieldjh]

Hi @AgranyaGitHub, if you'd like to try out the full text retrieval here, you can merge in the branch that's on:

git merge get_pmc_text

I've moved the publication limit into a CLI argument named --limit so you can run a query like this:

ontogpt pubmed-annotate --limit 2000 --get-pmc -t ibd_literature "search input goes here"

If that fails with the OpenAI API complaining about contexts being too long, try the larger context model by adding the option --model gpt-3.5-turbo-16k