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@monarch-initiative

Monarch Initiative

Cross-species disease discovery and diagnosis

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  1. mondo mondo Public template

    Mondo Disease Ontology

    Jupyter Notebook 237 53

  2. koza koza Public

    Data transformation framework for LinkML data models

    Python 48 4

  3. MAxO MAxO Public

    Medical action ontology

    HTML 52 4

  4. helpdesk helpdesk Public

    The Monarch Initiative Helpdesk

    7

  5. monarch-ingest monarch-ingest Public

    Data ingest application for Monarch Initiative knowledge graph using Koza

    Python 15 2

  6. monarch-app monarch-app Public

    Monarch Initiative website and API

    Python 18 6

Repositories

Showing 10 of 238 repositories
  • maxo-annotations Public

    Annotations to terms of the Medical Action Ontology (MAxO)

    monarch-initiative/maxo-annotations’s past year of commit activity
    2 CC-BY-4.0 0 70 1 Updated Nov 24, 2024
  • mondo Public template

    Mondo Disease Ontology

    monarch-initiative/mondo’s past year of commit activity
    Jupyter Notebook 237 CC-BY-4.0 53 371 (2 issues need help) 36 Updated Nov 24, 2024
  • phenopacket-store Public

    Collections of GA4GH phenopackets that represent individuals with Mendelian diseases.

    monarch-initiative/phenopacket-store’s past year of commit activity
    Jupyter Notebook 15 BSD-3-Clause 4 16 0 Updated Nov 24, 2024
  • mondo-ingest Public

    Coordinating the mondo-ingest with external sources

    monarch-initiative/mondo-ingest’s past year of commit activity
    Jupyter Notebook 6 3 224 (1 issue needs help) 18 Updated Nov 24, 2024
  • medgen Public

    MedGen ingest.

    monarch-initiative/medgen’s past year of commit activity
    Python 1 0 9 0 Updated Nov 24, 2024
  • omim Public

    Data ingest pipeline for OMIM.

    monarch-initiative/omim’s past year of commit activity
    Jupyter Notebook 7 3 63 7 Updated Nov 24, 2024
  • ontogpt Public

    LLM-based ontological extraction tools, including SPIRES

    monarch-initiative/ontogpt’s past year of commit activity
    Jupyter Notebook 612 BSD-3-Clause 78 59 9 Updated Nov 23, 2024
  • monarch-phenologs Public
    monarch-initiative/monarch-phenologs’s past year of commit activity
    Python 3 BSD-3-Clause 0 14 0 Updated Nov 23, 2024
  • phenio Public

    An integrated ontology for Phenomics

    monarch-initiative/phenio’s past year of commit activity
    Makefile 6 BSD-3-Clause 0 28 1 Updated Nov 23, 2024
  • phenopacket2prompt Public

    GA4GH Phenopacket to LLM prompt

    monarch-initiative/phenopacket2prompt’s past year of commit activity
    Java 3 MIT 1 2 1 Updated Nov 23, 2024
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