Add exclusion rules to mondo-excluded-values.yml

[matentzn]

Overview

First suggestion on how I would encode lexical rules for excluding synonyms altogether from synonym sync or externally managed content.

This PR:

• One
• Two
• Three

Pre-merge checklist

Documentation

Was the documentation added/updated under docs/?

• Yes
• No, updates to the docs were not necessary after careful consideration

QC

Was the full pipeline run before submitting this PR using sh run.sh make build-mondo-ingest on this branch (after
docker pull obolibrary/odkfull:dev), and no errors occurred?

• Yes
• No, there are no functional (code-related) changes to the pipeline in the PR, so no re-run is necessary

New Packages

Were any new Python packages added?

• Yes, requirements.txt.full was updated and an ODK issue submitted
• No

Were any other non-Python packages added?

• Yes, Dockerfile updated and an ODK issue submitted
• No

PR Review and Conversations Resolved

Has the PR been sufficiently reviewed by at least 1 team member of the Mondo Technical team and all threads resolved?

• Yes

[joeflack4]

How would we like to use these rules?

Sorry I didn't bring up at the meeting; just thinking of these now.

1. In cases of -confirmed or -updated, do we simply want (a) to add the EXCLUDE synonym type if it is missing? Or (b) not put these cases in the robot template, and instead output them into some other report file?
2. In -added cases, do we want to (a) add the synonym and add EXCLUDE? or (b) not put these cases in the robot template, and instead output them into some other report file?
3. Is there more we'd like to do w/ these rules?

[joeflack4]

When would we like to start using this in the synonym sync?

[joeflack4]

Regex-based lexical exclusion rules

I'm fine w/ this implementation, and with just adding rules incrementally as we go, starting with these.