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Edits for JOSS reviews #195

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Closed

Edits for JOSS reviews #195

wants to merge 136 commits into from

Commits on Apr 24, 2024

  1. chore: increase timeout for test shen moho

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  2. build: explicitly specify tqdm as dependency

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Commits on Apr 26, 2024

  1. docs: update contributing guide

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  2. chore: cleanup Make commands

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  3. docs: simplify binder env

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  4. refactor: update np random number generator

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  5. chore: update ruff version in pre-commit

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  6. style: reformat with new ruff version

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  7. docs: remove python version and nodefaults from binder env

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  8. docs: fix issues with subplot_layout example

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  9. docs: try nbgitpull link for launch binder buttons

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  10. docs: switch binder env to separate repo, remove launch buttons

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  11. docs: conform fetch walkthrough to standard figure creation style

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  12. chore: add tests for regions

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  13. style: fix regions test styling

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  14. style: add typing to function

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  15. docs: add available dataset gallery

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Commits on Apr 28, 2024

  1. docs: update dataset gallery template

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  2. docs: update bedmap2 dataset notebook

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  3. docs: add bedmachine dataset notebook

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  4. fix: remove faulty layer name from fetch bedmachine

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  5. docs: mention dataset gallery in fetch walkthrough

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  6. docs: update references

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Commits on Apr 29, 2024

  1. docs: add more dataset notebooks

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  2. docs: reorganize available dataset gallery

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  3. chore: don't run tests on docs or style commits

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  4. Merge branch 'main' into mdtanker-patch-3

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Commits on Apr 30, 2024

  1. feat: add Arctic/Greenland to utils/maps

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  2. feat: add some Greenland regions

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  3. feat: add fetch MODIS Greenland

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  4. feat: add pen kwarg to show_region

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  5. fix: load deepbedmap instead of returning string

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  6. docs: edit some docstrings

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Commits on May 8, 2024

  1. docs: add more dataset notebooks

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Commits on May 10, 2024

  1. fix: change greenland region slightly

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  2. feat: add BAS greenland groundingline

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  3. feat: add subset grid function

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  4. chore: change default profile map cmap

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  5. feat: add hemisphere arg to most plotting functions 

    BREAKING CHANGE: this alters a vast majority of the code!
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  6. chore: change arg image to modis

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  7. chore: add greenland coast version to plotting functions

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  8. fix: correctly center interactive map

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  9. feat: add inset map option for greenland

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  10. chore: misc fixes

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  11. feat: allow passing .cpt file to colorbar histogram

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  12. fix: improve creation of colormap

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  13. feat: add function for combined min max of several grids

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  14. docs: rerun all docs

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  15. docs: add modis mog to index

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  16. chore: fix test

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Commits on Jun 3, 2024

  1. refactor: change default point color in plot_profile

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  2. fix: warning about histogram if grid is constant value

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  3. feat: enable passing single grid to plot_3d

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  4. fix: update figure shifting of plot_3d

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  5. fix: update warning about grid region extract in plot_3d

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  6. feat: add cbar_perspective arg to plot_3d

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  7. refactor: remove default vlims for plot_3d

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  8. feat: add cbar_labels kwarg to plot_3d

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  9. refactor: changed default shading to false in plot_3d

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  10. refactor: set cbar position in plot_3d

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  11. refactor: use new set_cmap function in plot_3d

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  12. docs: rerun notebook

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  13. docs: add GHF to dataset gallery

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  14. docs: use full citations in dataset gallery

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  15. docs: add GIA to dataset gallery

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  16. docs: add gravity to dataset gallery

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  17. docs: add ice velocity to dataset gallery

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  18. docs: add magnetics to dataset gallery

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  19. docs: add mass change to dataset gallery

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  20. docs: add groundline to dataset gallery

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  21. docs: add geomap geology to dataset gallery

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  22. style: auto style fixes

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  23. docs: add basal melt rate to dataset gallery

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Commits on Jun 4, 2024

  1. docs: add measures ice boundaries to dataset gallery

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  2. style: auto style fix

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  3. style: fixes for pylint

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  4. docs: add rosetta grav/mag to gallery datasets

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Commits on Jun 5, 2024

  1. chore: pre-commit autoupdate to monthly

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  2. docs: clarify project scope and goals

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  3. docs: clarify all mentions of format of region tuples

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  4. fix: remove support for fetch ROSETTA grav and mag to align with goal… 

    … of only providing common and widespread datasets
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  5. fix: remove fetch basement due to limited spatial extent of data

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  6. refactor: rename fetch measures_boundaries to antarctic_boundaries 

    BREAKING CHANGE: make sure to update your code with the new function name!
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Commits on Jun 10, 2024

  1. feat: add bedmachine data from Greenland

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  2. feat: add geoid for Greenland and change geoid region for Antarctica

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  3. fix: for bedmachine grids, restore correct registration type and only… 

    … resample after geoid added to grids
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  4. chore: update tests for bedmachine with reference change

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  5. feat: add function to extract default hemisphere

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  6. refactor: if available, use environmental variables for setting hemis… 

    …phere throughout code

To utilize this feature, either set a system environment variable POLARTOOLKIT_HEMISPHERE equal to either south or north, or in your python file/notebook use os.environ to set this value for the current session.
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  7. refactor: use environment variable for setting hemisphere in profile

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  8. refactor: log info instead of error in mask_from_shp

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  9. docs: rerun notebooks

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  10. feat: enable greenland support for profiles

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  11. style: auto fixes

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Commits on Jun 11, 2024

  1. chore: update use of pylint

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  2. build: set min pylint version

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  3. refactor: remove unnecessary verbose and kwargs for some fetches

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  4. style: ignore pylint warnings

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  5. style: fix cmap issues in plot_profile

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  6. refactor: add hemisphere and remove kwargs from call to geoid

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  7. fix: specify hemisphere in bedmap2 reference test

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  8. chore: exclude some md files from pre-commit

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  9. build: include environment.yml file as backup for issues with installing

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  10. docs: consolidate and update install instructions

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  11. docs: add release instructions to contributing guide

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  12. docs: add instructions for EarthData login

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  13. docs: add missing links

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  14. feat: add mass change for Greenland

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  15. chore: update fetch mass change test

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  16. feat: add etopo data for the arctic/greenland

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    mdtanker committed Jun 11, 2024
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Commits on Jun 12, 2024

  1. feat: add ice velocity for Greenland

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  2. refactor: combine fetch modis_moa and modis_mog to modis 

    BREAKING CHANGE: make sure to update your code to use the new function `fetch.modis()` and specify MoG vs MoA with parameter hemisphere = "south" or "north"
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  3. build: add deprecation package to dev deps

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  4. chore: add deprecations to old fetch modis functions

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    mdtanker committed Jun 12, 2024
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  5. chore: add deprecation to old fetch measures boundaries function

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    mdtanker committed Jun 12, 2024
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  6. style: style fixes

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    mdtanker committed Jun 12, 2024
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  7. build: move deprecation from dev to normal dependencies

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  8. docs: merge arctic and greenland dataset gallery

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    mdtanker committed Jun 12, 2024
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  9. refactor: move alter_region from utils to regions

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    mdtanker committed Jun 12, 2024
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  10. feat: add region_ll_to_xy function

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    mdtanker committed Jun 12, 2024
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  11. fix: properly set default region in basemap

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    mdtanker committed Jun 12, 2024
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  12. feat: add points option to basemap

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    mdtanker committed Jun 12, 2024
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  13. fix: remove alter region from get_regions

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    mdtanker committed Jun 12, 2024
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  14. docs: major overhaul of docs structure to follow the Divio system

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    mdtanker committed Jun 12, 2024
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  15. style: auto style fixes

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    mdtanker committed Jun 12, 2024
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  16. fix: fix tests for deprecations

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    mdtanker committed Jun 12, 2024
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Commits on Jun 13, 2024

  1. fix: remove hash from mass_change

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    mdtanker committed Jun 13, 2024
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  2. fix: fix fetch ice vel issue

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    mdtanker committed Jun 13, 2024
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  3. refactor: update deprecated pandas delim_whitespace

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    mdtanker committed Jun 13, 2024
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  4. fix: fix deprecated test alter region

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    mdtanker committed Jun 13, 2024
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  5. fix: fix deprecated test measures boundaries

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    mdtanker committed Jun 13, 2024
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  6. docs: rerun all dataset gallery notebooks

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    mdtanker committed Jun 13, 2024
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  7. chore: add codecov token

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    mdtanker committed Jun 13, 2024
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  8. Merge branch 'main' into mdtanker-patch-3

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    mdtanker authored Jun 13, 2024
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  9. chore: mark some tests as earthdata

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    mdtanker committed Jun 13, 2024
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  10. docs: add logo to README

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    mdtanker committed Jun 13, 2024
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