Merge branch 'viash-hub:main' into main #185

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Job	Run time
test / List components to test	36s
test / Test (multiqc, src/multiqc/config.vsh.yaml, src/multiqc/, bash_script, multiqc)	1m 19s
test / Test (arriba, src/arriba/config.vsh.yaml, src/arriba/, bash_script, arriba)	2m 56s
test / Test (featurecounts, src/featurecounts/config.vsh.yaml, src/featurecounts/, bash_script, featurec...	54s
test / Test (busco_run, busco, src/busco/busco_run/config.vsh.yaml, src/busco/busco_run/, bash_script, b...	6m 42s
test / Test (busco_download_datasets, busco, src/busco/busco_download_datasets/config.vsh.yaml, src/busc...	1m 42s
test / Test (busco_list_datasets, busco, src/busco/busco_list_datasets/config.vsh.yaml, src/busco/busco_...	2m 28s
test / Test (rsem_prepare_reference, rsem, src/rsem/rsem_prepare_reference/config.vsh.yaml, src/rsem/rse...	11m 2s
test / Test (salmon_quant, salmon, src/salmon/salmon_quant/config.vsh.yaml, src/salmon/salmon_quant/, ba...	58s
test / Test (salmon_index, salmon, src/salmon/salmon_index/config.vsh.yaml, src/salmon/salmon_index/, ba...	50s
test / Test (umi_tools_dedup, umi_tools, src/umi_tools/umi_tools_dedup/config.vsh.yaml, src/umi_tools/um...	1m 55s
test / Test (umi_tools_extract, umi_tools, src/umi_tools/umi_tools_extract/config.vsh.yaml, src/umi_tool...	1m 54s
test / Test (bd_rhapsody_make_reference, bd_rhapsody, src/bd_rhapsody/bd_rhapsody_make_reference/config....	2m 35s
test / Test (samtools_collate, samtools, src/samtools/samtools_collate/config.vsh.yaml, src/samtools/sam...	45s
test / Test (samtools_view, samtools, src/samtools/samtools_view/config.vsh.yaml, src/samtools/samtools_...	44s
test / Test (samtools_sort, samtools, src/samtools/samtools_sort/config.vsh.yaml, src/samtools/samtools_...	42s
test / Test (samtools_fastq, samtools, src/samtools/samtools_fastq/config.vsh.yaml, src/samtools/samtool...	52s
test / Test (samtools_stats, samtools, src/samtools/samtools_stats/config.vsh.yaml, src/samtools/samtool...	46s
test / Test (samtools_idxstats, samtools, src/samtools/samtools_idxstats/config.vsh.yaml, src/samtools/s...	1m 22s
test / Test (samtools_flagstat, samtools, src/samtools/samtools_flagstat/config.vsh.yaml, src/samtools/s...	42s
test / Test (samtools_index, samtools, src/samtools/samtools_index/config.vsh.yaml, src/samtools/samtool...	43s
test / Test (samtools_faidx, samtools, src/samtools/samtools_faidx/config.vsh.yaml, src/samtools/samtool...	56s
test / Test (samtools_fasta, samtools, src/samtools/samtools_fasta/config.vsh.yaml, src/samtools/samtool...	47s
test / Test (falco, src/falco/config.vsh.yaml, src/falco/, bash_script, falco)	2m 6s
test / Test (star_align_reads, star, src/star/star_align_reads/config.vsh.yaml, src/star/star_align_read...	4m 10s
test / Test (star_genome_generate, star, src/star/star_genome_generate/config.vsh.yaml, src/star/star_ge...	4m 24s
test / Test (bcl_convert, src/bcl_convert/config.vsh.yaml, src/bcl_convert/, bash_script, bcl_convert)	2m 28s
test / Test (seqtk_subseq, seqtk, src/seqtk/seqtk_subseq/config.vsh.yaml, src/seqtk/seqtk_subseq/, bash_...	1m 37s
test / Test (seqtk_sample, seqtk, src/seqtk/seqtk_sample/config.vsh.yaml, src/seqtk/seqtk_sample/, bash_...	1m 37s
test / Test (agat_convert_sp_gff2tsv, agat, src/agat/agat_convert_sp_gff2tsv/config.vsh.yaml, src/agat/a...	1m 3s
test / Test (agat_convert_bed2gff, agat, src/agat/agat_convert_bed2gff/config.vsh.yaml, src/agat/agat_co...	2m 7s
test / Test (agat_convert_embl2gff, agat, src/agat/agat_convert_embl2gff/config.vsh.yaml, src/agat/agat_...	1m 3s
test / Test (agat_convert_sp_gff2gtf, agat, src/agat/agat_convert_sp_gff2gtf/config.vsh.yaml, src/agat/a...	1m 21s
test / Test (agat_convert_sp_gxf2gxf, agat, src/agat/agat_convert_sp_gxf2gxf/config.vsh.yaml, src/agat/a...	1m 5s
test / Test (pear, src/pear/config.vsh.yaml, src/pear/, bash_script, pear)	47s
test / Test (fastp, src/fastp/config.vsh.yaml, src/fastp/, bash_script, fastp)	46s
test / Test (lofreq_indelqual, lofreq, src/lofreq/indelqual/config.vsh.yaml, src/lofreq/indelqual/, bash...	48s
test / Test (lofreq_call, lofreq, src/lofreq/call/config.vsh.yaml, src/lofreq/call/, bash_script, lofreq...	50s
test / Test (qualimap_rnaseq, qualimap, src/qualimap/qualimap_rnaseq/config.vsh.yaml, src/qualimap/quali...	1m 21s
test / Test (gffread, src/gffread/config.vsh.yaml, src/gffread/, bash_script, gffread)	1m 37s
test / Test (bedtools_bamtofastq, bedtools, src/bedtools/bedtools_bamtofastq/config.vsh.yaml, src/bedtoo...	45s
test / Test (bedtools_intersect, bedtools, src/bedtools/bedtools_intersect/config.vsh.yaml, src/bedtools...	1m 47s
test / Test (bedtools_bedtobam, bedtools, src/bedtools/bedtools_bedtobam/config.vsh.yaml, src/bedtools/b...	1m 33s
test / Test (bedtools_sort, bedtools, src/bedtools/bedtools_sort/config.vsh.yaml, src/bedtools/bedtools_...	2m 11s
test / Test (bedtools_getfasta, bedtools, src/bedtools/bedtools_getfasta/config.vsh.yaml, src/bedtools/b...	46s
test / Test (cutadapt, src/cutadapt/config.vsh.yaml, src/cutadapt/, bash_script, cutadapt)	57s
	1h 21m 19s

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Merge branch 'viash-hub:main' into main #185

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Merge branch 'viash-hub:main' into main #185

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