🌱📦 biobox

A collection of bioinformatics tools for working with sequence data.

Objectives

• Reusability: Facilitating the use of components across various projects and contexts.
• Reproducibility: Ensuring that components are reproducible and can be easily shared.
• Best Practices: Adhering to established standards in software development and bioinformatics.

Contributing

We encourage contributions from the community. To contribute:

1. Fork the Repository: Start by forking this repository to your account.
2. Develop Your Component: Create your Viash component, ensuring it aligns with our best practices (detailed below).
3. Submit a Pull Request: After testing your component, submit a pull request for review.

Contribution Guidelines

The contribution guidelines describes which steps you should follow to contribute a component to this repository.

1. Find a component to contribute
2. Add config template
3. Fill in the metadata
4. Find a suitable container
5. Create help file
6. Create or fetch test data
7. Add arguments for the input files
8. Add arguments for the output files
9. Add arguments for the other arguments
10. Add a Docker engine
11. Write a runner script
12. Create test script
13. Create a /var/software_versions.txt file

See the CONTRIBUTING file for more details.

Support and Community

For support, questions, or to join our community:

• Issues: Submit questions or issues via the GitHub issue tracker.
• Discussions: Join our discussions via GitHub Discussions.

License

This repository is licensed under an MIT license. See the LICENSE file for details.