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@chklovski chklovski released this 22 Jan 09:27
· 14 commits to main since this release
1.0.1
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Learn about vigilant mode.

1.0.1 (2023-01-22)

This release uses models built on [GTDB release 202].
This release uses the DIAMOND database version 2, available at DOI [10.5281/zenodo.5571251].

Models and database are unchanged from v 1.0.0, output results should be the same.

New features in this release:

  • You can specify an alternate temporary directory for CheckM2 using --tmpdir in case the default is limited in space (addresses #35)
  • Added a --database_path option to checkm2 predict. If you have a downloaded CheckM2 database but cannot set it via checkm2 database --setdblocation, you can provide the path to checkm2 predict instead. (addresses #15)
  • Logging now notes CheckM2 version
  • CheckM2 Version 1.0.1 onwards is now available on bioconda and pypi.

New bugfixes in this release:

  • CheckM2 won't crash when calculating GC content of fasta files with lowercase bases (addresses #37)
  • CheckM2 now correctly calculates GC content of all sequences in the fasta file instead of the last one
  • Fixed database download version check failure that would sometimes occur (addresses #31)
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