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42 Open 69 Closed
42 Open 69 Closed
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Issues list

Descriptions of the columns in the output file
#122 opened Nov 20, 2024 by harper357
UnicodeEncodeError: Test run and regular runs keep failing
#121 opened Nov 7, 2024 by lyisrae1
checkm2 testrun output inconsistent with the README:
#120 opened Nov 1, 2024 by fconstancias
Models not loading for test run
#119 opened Oct 29, 2024 by spennino1
[Feature Request] Gzip support for precomputed gene predictions
#118 opened Oct 22, 2024 by jolespin
dependency issue
#117 opened Oct 14, 2024 by EJS01
Is the reference diamond database periodically being updated? How can I check if my database is still up to date?
#116 opened Oct 11, 2024 by jvollme
Bug on a fresh install
#115 opened Sep 24, 2024 by asaldivar93
2
Runing Checkm2 using MiDAS db
#114 opened Sep 19, 2024 by Hedi65
UnicodeEncodeError when running testrun and on real data.
#112 opened Aug 13, 2024 by patriciatran
2
TypeError: split() error
#110 opened Jul 29, 2024 by marshjw
6
Naming Output TSV File
#109 opened Jun 13, 2024 by emilyhyde
1
Database download failed
#107 opened May 30, 2024 by jtamames
3
Testrun ERROR: No DIAMOND annotation was generated.
#105 opened May 27, 2024 by Mayurk619
4
testrun error: AttributeError: module '__main__' has no attribute '__spec__'
#104 opened May 26, 2024 by rfour92
Got different results of the same genome from the different runs of checkm2
#103 opened May 23, 2024 by quliping
3
coding density
#101 opened Mar 28, 2024 by lianzhh
TypeError: metaclass conflict
#100 opened Mar 28, 2024 by laczik-git
9
Database update?
#99 opened Mar 12, 2024 by cmkobel
2
AttributeError: 'Predictor' object has no attribute '__set_up_prodigal_thread'
#97 opened Feb 27, 2024 by MrOlm
2
[Feature Request] Use #!/usr/bin/env python instead of hardcoding python path
#96 opened Feb 19, 2024 by jolespin
Error in DIAMOND execution
#95 opened Feb 7, 2024 by KateSakharova
2
Checkm2 flags certain species and genera as contaminated on a consistent basis.
#93 opened Jan 15, 2024 by Fabian-Bastiaanssen
Question about Checkm2 Annotation
#92 opened Jan 11, 2024 by aljazdzy
1
[Question] How to determine the number of splits used for Diamond annotation?
#88 opened Nov 30, 2023 by jolespin
1
ProTip! What’s not been updated in a month: updated:<2024-10-25.