Database download failed

[jtamames]

Hello, when trying to download the database, I am finding the following error:

checkm2 database --download --path /disk2/databases/
[05/30/2024 12:54:33 PM] INFO: Command: Download database. Checking internal path information.
Traceback (most recent call last):
File "/home/tamames/software/miniconda3/envs/checkm2/bin/checkm2", line 280, in
fileManager.DiamondDB().download_database(args.path)
File "/home/tamames/software/miniconda3/envs/checkm2/lib/python3.8/site-packages/checkm2/fileManager.py", line 127, in download_database
backpack_downloader.download_and_extract(download_location, DOI, progress_bar=True, no_check_version=False)
File "/home/tamames/software/miniconda3/envs/checkm2/lib/python3.8/site-packages/checkm2/zenodo_backpack.py", line 46, in download_and_extract
recordID = self._retrieve_record_ID(DOI)
File "/home/tamames/software/miniconda3/envs/checkm2/lib/python3.8/site-packages/checkm2/zenodo_backpack.py", line 168, in _retrieve_record_ID
raise ZenodoConnectionException('DOI could not be resolved. Check your DOI is correct.')
checkm2.zenodo_backpack.ZenodoConnectionException: DOI could not be resolved. Check your DOI is correct.

I tried to download the database with the link provided in #83 (https://zenodo.org/records/5571251), but that also fails. It would be great if you can provide a valid link for downloading the database.
Best,
Javier

[wwood]

Hi Javier, I wonder if this is an issue with your internet as connection or is temporary? -\------------- Ben Woodcroft Group leader, Centre for Microbiome Research, QUT

…

________________________________ From: Javier Tamames ***@***.***> Sent: Thursday, May 30, 2024 9:05:24 PM To: chklovski/CheckM2 ***@***.***> Cc: Subscribed ***@***.***> Subject: [chklovski/CheckM2] Database download failed (Issue #107) Hello, when trying to download the database, I am finding the following error: checkm2 database --download --path /disk2/databases/ [05/30/2024 12:54:33 PM] INFO: Command: Download database. Checking internal path information. Traceback (most recent call last): File "/home/tamames/software/miniconda3/envs/checkm2/bin/checkm2", line 280, in fileManager.DiamondDB().download_database(args.path) File "/home/tamames/software/miniconda3/envs/checkm2/lib/python3.8/site-packages/checkm2/fileManager.py", line 127, in download_database backpack_downloader.download_and_extract(download_location, DOI, progress_bar=True, no_check_version=False) File "/home/tamames/software/miniconda3/envs/checkm2/lib/python3.8/site-packages/checkm2/zenodo_backpack.py", line 46, in download_and_extract recordID = self._retrieve_record_ID(DOI) File "/home/tamames/software/miniconda3/envs/checkm2/lib/python3.8/site-packages/checkm2/zenodo_backpack.py", line 168, in _retrieve_record_ID raise ZenodoConnectionException('DOI could not be resolved. Check your DOI is correct.') checkm2.zenodo_backpack.ZenodoConnectionException: DOI could not be resolved. Check your DOI is correct. I tried to download the database with the link provided in #83<#83> (https://zenodo.org/records/5571251), but that also fails. It would be great if you can provide a valid link for downloading the database. Best, Javier ― Reply to this email directly, view it on GitHub<#107>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AAADX5AAEO2EI7WT77O5SSLZE4BXJAVCNFSM6AAAAABIQWKL42VHI2DSMVQWIX3LMV43ASLTON2WKOZSGMZDKMZXGY2DMNA>. You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

[jtamames]

Hello Ben

Thanks for responding. Apparently my connectivity is ok, and I am able to download other files and databases from external sources

Best,
J

[wwood]

Hmm. It's just a bit strange as I'm not having any issue downloading, at least the file from zenodo - haven't checked with checkm2 data.