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@alexdobin alexdobin released this 14 Aug 23:21
· 661 commits to master since this release
2.6.1a
45f7bd7

STAR 2.6.1a 2018/08/14

  • Process substitution can now be used with zipped VCF files, e.g. --varVCFfile <(zcat vcf.gz)
  • Implemented fatal error exception if no SNPs are found in VCF files.
  • Implemented --chimOutJunctionFormat 1 option to output some metadata (command lines and basic mapping statistics) at the end of Chimeric.out.junction file.
  • The default value of --peOverlapMMp is reduced to 0.01 for less aggressive mate merging.
  • Fixed the problem with control characters (ASCII<32) in genome and input read sequences. They used to be converted to N, now they are removed.
  • Fixed a bug that caused serious problems with --sjdbInsertSave All option.
  • Fixed a bug in merging mates (--peOverlap*) algorithm that was causing rare seg-faults.
  • Fixed the GtstrandBit problem.
  • Fixed a bug with multiple RG lines when inputting reads in SAM format.
  • Fixed a bug causing seg-faults with shared memory and --outStd options.
  • Fixed a bug with --outTmpDir and fifo files.
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