Skip to content

Issues: alexdobin/STAR

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

891 Open 1,166 Closed
891 Open 1,166 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

STARsolo and Cellranger (v8) differences in estimating number of cells
#2245 opened Nov 21, 2024 by angelasanzo
Add RG ID to cell barcodes
#2244 opened Nov 20, 2024 by drneavin
How to include the lane index in STARsolo count matrix barcodes.tsv?
#2243 opened Nov 19, 2024 by mkarikom
How to perform corrected Cell Barcode/UMI calling with an externally sorted BAM?
#2241 opened Nov 14, 2024 by mkarikom
Velocyto question
#2239 opened Nov 13, 2024 by Liripo
1
STARsolo settings for SMART-seq3
#2238 opened Nov 7, 2024 by apredeus
What's the difference between "outSAMstrandField" and "outFilterIntronMotifs RemoveNoncanonical"
#2237 opened Nov 7, 2024 by hungweichen0327
Multi Mapping Loci Meaning
#2236 opened Nov 6, 2024 by mattg478
Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to RAM Limit — Can the Genome Be Split for Indexing, or Are There Other Solutions?
#2235 opened Nov 5, 2024 by Vijithkumar2020
Custom refgen generation (scRNA)
#2234 opened Nov 5, 2024 by radiasso
Indexing transcriptome bam file
#2233 opened Nov 2, 2024 by aayushraman
transcriptInfo.tab format
#2232 opened Nov 1, 2024 by starkiller-liuzhiming
Uniquely mapped reads number
#2231 opened Oct 31, 2024 by hamzaaitabbou96
Question about Read Length parameter during reference creation
#2230 opened Oct 27, 2024 by Motoufiq
Overrepresentation of Reads Mapping to Intronic Regions
#2229 opened Oct 23, 2024 by Matthieu-Duot
soloUMIdedup 1MM_Directional_UMItools and 1MM_Directional difference.
#2228 opened Oct 23, 2024 by araboapresyan
Mapping speed of STAR is very different for similar bam
#2227 opened Oct 22, 2024 by dingyaozhang
Corrupt SAM/BAM file due to NULL injected into MD tag with two-pass
#2226 opened Oct 8, 2024 by btownshend
soloType CB_UMI_Complex is incompatible with soloCBwhitelist None
#2225 opened Oct 7, 2024 by aepstein96
Reference genome file download problem
#2224 opened Oct 6, 2024 by FeeFaysalTusar
Add index sequence to Unmapped read FASTQ headers
#2223 opened Oct 3, 2024 by andrewkennard
STARsolo run with --soloType CB_UMI_Complex uses too much memory.
#2222 opened Oct 1, 2024 by brgew
1
Much fewer than expected exons.
#2221 opened Sep 30, 2024 by EvanKomp
--soloType CB_UMI_Complex ,didn't match barcodes or UMIs
#2219 opened Sep 27, 2024 by StardDii
1
--outSAMunmapped Within some reads being lost
#2218 opened Sep 26, 2024 by alexander-e-f-smith
ProTip! Adding no:label will show everything without a label.