update research codebase #80
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| name: update research codebase | |
| on: | |
| schedule: | |
| - cron: "0 6 * * 1" # 06:00 of every Monday | |
| workflow_dispatch: | |
| jobs: | |
| dev_updates: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| token: ${{ secrets.PR_MAINTAIN }} | |
| repository: Project-MONAI/research-contributions | |
| ref: main | |
| - uses: actions/setup-python@v3 | |
| with: | |
| python-version: 3.8 | |
| - name: Cache weekly timestamp | |
| id: pip-cache | |
| run: echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT | |
| shell: bash | |
| - name: Cache for pip | |
| uses: actions/cache@v3 | |
| id: cache | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ runner.os }}-pip-${{ steps.pip-cache.outputs.datew }} | |
| - name: Install tools | |
| run: | | |
| sudo apt-get -y install dos2unix libtinfo5 | |
| python -m pip install --upgrade pip wheel | |
| pip install isort black autopep8 torch numpy | |
| pip install pycodestyle!=2.11.0 | |
| - name: Make changes | |
| id: black | |
| run: | | |
| dos2unix --version | |
| autopep8 --version | |
| isort --version | |
| black --version | |
| find . -type f -not -path "./.git/*" -print0 | xargs -0 -n 1 -P 2 dos2unix # remove return | |
| autopep8 --recursive --in-place --aggressive --aggressive --ignore E721 --max-line-length 200 . | |
| isort . | |
| black --skip-magic-trailing-comma . | |
| git config --global user.name 'monai-bot' | |
| git config --global user.email '[email protected]' | |
| git add . | |
| git diff --cached | cat | |
| changes= | |
| if [ -n "$(git status --porcelain)" ]; then | |
| changes="true" | |
| fi | |
| echo "format=$changes" >> $GITHUB_OUTPUT | |
| shell: bash | |
| - name: Git commit | |
| if: steps.black.outputs.format == 'true' | |
| run: | | |
| git commit -sam "[MONAI] code formatting" | |
| git diff @~1 | |
| git checkout -b auto-update | |
| git push -f --set-upstream origin auto-update | |
| shell: bash | |
| - name: Submit PR | |
| if: steps.black.outputs.format == 'true' | |
| run: | | |
| gh pr create --fill --title "auto updates" --base main --head "auto-update" | |
| env: | |
| token: ${{ secrets.PR_MAINTAIN }} | |
| GITHUB_TOKEN: ${{ secrets.PR_MAINTAIN }} |