cron-research.yml

name: update research codebase
on:
  schedule:
    - cron: "0 6 * * 1"  # 06:00 of every Monday
  workflow_dispatch:

jobs:
  dev_updates:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v3
        with:
          token: ${{ secrets.PR_MAINTAIN }}
          repository: Project-MONAI/research-contributions
          ref: main

      - uses: actions/setup-python@v3
        with:
          python-version: 3.8

      - name: Cache weekly timestamp
        id: pip-cache
        run: echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT
        shell: bash

      - name: Cache for pip
        uses: actions/cache@v3
        id: cache
        with:
          path: ~/.cache/pip
          key: ${{ runner.os }}-pip-${{ steps.pip-cache.outputs.datew }}

      - name: Install tools
        run: |
          sudo apt-get -y install dos2unix libtinfo5
          python -m pip install --upgrade pip wheel
          pip install isort black autopep8 torch numpy
          pip install pycodestyle!=2.11.0

      - name: Make changes
        id: black
        run: |
          dos2unix --version
          autopep8 --version
          isort --version
          black --version

          find . -type f -not -path "./.git/*" -print0 | xargs -0 -n 1 -P 2 dos2unix  # remove return

          autopep8 --recursive --in-place --aggressive --aggressive --ignore E721 --max-line-length 200 .
          isort .
          black --skip-magic-trailing-comma .

          git config --global user.name 'monai-bot'
          git config --global user.email 'monai.miccai2019@gmail.com'
          git add .
          git diff --cached | cat

          changes=
          if [ -n "$(git status --porcelain)" ]; then
            changes="true"
          fi
          echo "format=$changes" >> $GITHUB_OUTPUT
        shell: bash

      - name: Git commit
        if: steps.black.outputs.format == 'true'
        run: |
          git commit -sam "[MONAI] code formatting"
          git diff @~1
          git checkout -b auto-update
          git push -f --set-upstream origin auto-update
        shell: bash

      - name: Submit PR
        if: steps.black.outputs.format == 'true'
        run: |
          gh pr create --fill --title "auto updates" --base main --head "auto-update"
        env:
          token: ${{ secrets.PR_MAINTAIN }}
          GITHUB_TOKEN: ${{ secrets.PR_MAINTAIN }}