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Development #36

Merged
merged 58 commits into from
Dec 19, 2023
Merged

Development #36

merged 58 commits into from
Dec 19, 2023

Commits on Sep 13, 2022

  1. ms_plot

    @jalew188
    jalew188 committed Sep 13, 2022
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  2. MS_Plotter.model_mgr.transfer_learn()

    @jalew188
    jalew188 committed Sep 13, 2022
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  3. MS_Plotter.model_mgr.transfer_learn()

    @jalew188
    jalew188 committed Sep 13, 2022
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  4. easier access data

    @jalew188
    jalew188 committed Sep 13, 2022
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  5. FIX plotly_hovermode

    @jalew188
    jalew188 committed Sep 13, 2022
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Commits on Sep 14, 2022

  1. minor updates

    @jalew188
    jalew188 committed Sep 14, 2022
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  2. update to peptdeep latest version

    @jalew188
    jalew188 committed Sep 14, 2022
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Commits on Sep 15, 2022

  1. better bbplot

    @jalew188
    jalew188 committed Sep 15, 2022
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Commits on Sep 16, 2022

  1. reader_utils

    @jalew188
    jalew188 committed Sep 16, 2022
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Commits on Sep 17, 2022

  1. Feng contrib plots

    @jalew188
    jalew188 committed Sep 17, 2022
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  2. rm alphatims version limit

    @jalew188
    jalew188 committed Sep 17, 2022
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Commits on Sep 18, 2022

  1. add_shape->update_layout

    @jalew188
    jalew188 committed Sep 18, 2022
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  2. include_precursor in xic plot

    @jalew188
    jalew188 committed Sep 18, 2022
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  3. fig.show('svg')

    @jalew188
    jalew188 committed Sep 18, 2022
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  4. refine PCC calc

    @jalew188
    jalew188 committed Sep 18, 2022
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Commits on Sep 21, 2022

  1. minor changes

    @jalew188
    jalew188 committed Sep 21, 2022
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Commits on Sep 25, 2022

  1. mDIa

    @jalew188
    jalew188 committed Sep 25, 2022
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Commits on Sep 26, 2022

  1. integrated alpharaw

    @jalew188
    jalew188 committed Sep 26, 2022
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Commits on Sep 28, 2022

  1. mDIA support

    @jalew188
    jalew188 committed Sep 28, 2022
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  2. pcc

    @jalew188
    jalew188 committed Sep 28, 2022
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Commits on Sep 30, 2022

  1. minor update

    @jalew188
    jalew188 committed Sep 30, 2022
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  2. view_dim=rt or im

    @jalew188
    jalew188 committed Sep 30, 2022
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Commits on Oct 1, 2022

  1. add zeros

    @jalew188
    jalew188 committed Oct 1, 2022
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Commits on Oct 4, 2022

  1. minor updates

    @jalew188
    jalew188 committed Oct 4, 2022
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Commits on Oct 5, 2022

  1. tims uint16 to float

    @jalew188
    jalew188 committed Oct 5, 2022
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Commits on Oct 7, 2022

  1. FIX make_subplots import

    @jalew188
    jalew188 committed Oct 7, 2022
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  2. legend_group

    @jalew188
    jalew188 committed Oct 7, 2022
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  3. legend_group M0 seperated

    @jalew188
    jalew188 committed Oct 7, 2022
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Commits on Oct 8, 2022

  1. int(charge)

    @jalew188
    jalew188 committed Oct 8, 2022
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  2. FIX no peaks matched MS2

    @jalew188
    jalew188 committed Oct 8, 2022
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  3. FIX no peaks matched MS2

    @jalew188
    jalew188 committed Oct 8, 2022
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  4. FIX no peaks matched MS2

    @jalew188
    jalew188 committed Oct 8, 2022
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  5. FIX no peaks matched MS2

    @jalew188
    jalew188 committed Oct 8, 2022
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Commits on Oct 9, 2022

  1. FIX empty matching

    @jalew188
    jalew188 committed Oct 9, 2022
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  2. rt_tol->rt_win

    @jalew188
    jalew188 committed Oct 9, 2022
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Commits on Oct 12, 2022

  1. minor

    @jalew188
    jalew188 committed Oct 12, 2022
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Commits on Oct 27, 2022

  1. ready for PR

    @jalew188
    jalew188 committed Oct 27, 2022
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Commits on Oct 28, 2022

  1. find both left and left closest specs

    @jalew188
    jalew188 committed Oct 28, 2022
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  2. Merge pull request #32 from jalew188/peptdeep_latest 

    Peptdeep latest
    @EugeniaVoytik
    EugeniaVoytik authored Oct 28, 2022
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Commits on Jan 17, 2023

  1. Merge branch 'peptdeep_latest' of https://github.com/mannlabs/alphaviz … 

    …into peptdeep_latest
    @jalew188
    jalew188 committed Jan 17, 2023
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  2. mz slicing

    @jalew188
    jalew188 committed Jan 17, 2023
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  3. update ms2 plots

    @jalew188
    jalew188 committed Jan 17, 2023
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Commits on Jan 19, 2023

  1. frag_end_idx->frag_stop_idx; flex APIs

    @jalew188
    jalew188 committed Jan 19, 2023
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  2. rename

    @jalew188
    jalew188 committed Jan 19, 2023
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Commits on Jan 20, 2023

  1. use alphabase.match.match_utils instead of peptdeep's

    @jalew188
    jalew188 committed Jan 20, 2023
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Commits on Feb 14, 2023

  1. use ppm or not

    @jalew188
    jalew188 committed Feb 14, 2023
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Commits on Dec 19, 2023

  1. use alpharaw.viz for thermo

    @zhouxiexuan
    zhouxiexuan committed Dec 19, 2023
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  2. add example notebook

    @zhouxiexuan
    zhouxiexuan committed Dec 19, 2023
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  3. update

    @zhouxiexuan
    zhouxiexuan committed Dec 19, 2023
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  4. peptdeep upgraded

    @zhouxiexuan
    zhouxiexuan committed Dec 19, 2023
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  5. add xic plot example

    @zhouxiexuan
    zhouxiexuan committed Dec 19, 2023
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  6. add xic plot example

    @zhouxiexuan
    zhouxiexuan committed Dec 19, 2023
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  7. Merge pull request #35 from MannLabs/peptdeep_latest 

    Peptdeep latest
    @jalew188
    jalew188 authored Dec 19, 2023
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  8. contrib->thermo

    @zhouxiexuan
    zhouxiexuan committed Dec 19, 2023
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  9. use .bumpversion.cfg

    @zhouxiexuan
    zhouxiexuan committed Dec 19, 2023
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  10. move bumpversion.cfg to .bumpversion.cfg

    @zhouxiexuan
    zhouxiexuan committed Dec 19, 2023
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  11. move .bumpversion.cfg out of misc

    @zhouxiexuan
    zhouxiexuan committed Dec 19, 2023
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  12. Bump version: 1.1.15 → 1.2.0

    @zhouxiexuan
    zhouxiexuan committed Dec 19, 2023
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