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Development #36

Merged
merged 58 commits into from
Dec 19, 2023
Merged

Development #36

merged 58 commits into from
Dec 19, 2023

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jalew188
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Add thermo module for thermo data vis

@jalew188
ms_plot
78b0b26
@jalew188
MS_Plotter.model_mgr.transfer_learn()
fd007b1
@jalew188
MS_Plotter.model_mgr.transfer_learn()
043096c
@jalew188
easier access data
10f8b98
@jalew188
FIX plotly_hovermode
9fa28a1
@jalew188
minor updates
a3cf678
@jalew188
update to peptdeep latest version
4f8e52c
@jalew188
better bbplot
dbd883c
@jalew188
reader_utils
d6812bd
@jalew188
Feng contrib plots
ed2eea4
@jalew188
rm alphatims version limit
8c455d8
@jalew188
add_shape->update_layout
ec8f2b9
@jalew188
include_precursor in xic plot
e132a9e
@jalew188
fig.show('svg')
3530d8a
@jalew188
refine PCC calc
7a8297b
@jalew188
minor changes
cb10e38
@jalew188
mDIa
30414b2
@jalew188
integrated alpharaw
c7d111d
@jalew188
mDIA support
1fea08e
@jalew188
pcc
9fdc564
@jalew188
minor update
eb528bc
@jalew188
view_dim=rt or im
74b6798
@jalew188
add zeros
c441c1f
@jalew188
minor updates
de9661f
@jalew188
tims uint16 to float
a7facf6
@jalew188
FIX make_subplots import
fcbc6db
@jalew188
legend_group
bd845d2
@jalew188
legend_group M0 seperated
965c099
@jalew188
int(charge)
2f7a044
@jalew188
FIX no peaks matched MS2
5655f76
jalew188 and others added 28 commits October 8, 2022 17:36
@jalew188
FIX no peaks matched MS2
4dffb59
@jalew188
FIX no peaks matched MS2
b58e869
@jalew188
FIX no peaks matched MS2
a83874c
@jalew188
FIX empty matching
b22c1f9
@jalew188
rt_tol->rt_win
8ef20fe
@jalew188
minor
602c94e
@jalew188
ready for PR
85ed0dc
@jalew188
find both left and left closest specs
56a1d22
@EugeniaVoytik
Merge pull request #32 from jalew188/peptdeep_latest
a196076 
Peptdeep latest
@jalew188
Merge branch 'peptdeep_latest' of https://github.com/mannlabs/alphaviz …
14e2638 
…into peptdeep_latest
@jalew188
mz slicing
4b92d58
@jalew188
update ms2 plots
cee7225
@jalew188
frag_end_idx->frag_stop_idx; flex APIs
2feb23d
@jalew188
rename
9e4031b
@jalew188
use alphabase.match.match_utils instead of peptdeep's
11d56dd
@jalew188
use ppm or not
42a3f65
@zhouxiexuan
use alpharaw.viz for thermo
7631f51
@zhouxiexuan
add example notebook
8e78b99
@zhouxiexuan
update
59c9b83
@zhouxiexuan
peptdeep upgraded
1ca8265
@zhouxiexuan
add xic plot example
32448ef
@zhouxiexuan
add xic plot example
346d736
@jalew188
Merge pull request #35 from MannLabs/peptdeep_latest
67a13cc 
Peptdeep latest
@zhouxiexuan
contrib->thermo
1d11c09
@zhouxiexuan
use .bumpversion.cfg
ccbe2d4
@zhouxiexuan
move bumpversion.cfg to .bumpversion.cfg
9b55028
@zhouxiexuan
move .bumpversion.cfg out of misc
fd66cf7
@zhouxiexuan
Bump version: 1.1.15 → 1.2.0
70cdeb1
@jalew188 jalew188 merged commit 660cca2 into main Dec 19, 2023
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3 participants
@jalew188 @EugeniaVoytik @zhouxiexuan