Releases: DReichLab/AdmixTools
v8.0.2
v8.0.1
Minor bugfix release relating to Makefile
v8.0.0
This release introduces a new transpose packed format, which enables fast merging and subsetting by individuals.
v7.0.2
Version 7.0.2 has important bugfixes to qpfstats.
v7.0.1
old qpfstats could behave badly when some samples had very low coverage
v7.0
-
Users of ADMIXTOOLS should know that an alternate version in R (native mode -- reimplementation)
written by Robert Maier is also available on Github.
See https://github.com/uqrmaie1/admixtools
Executables run fast, and it has features not available in this C version, such as interactive
exploration of graph phylogenies -
Version 7.0 has numerous upgrades.
a) Two new executables --qpfstats qpfmv allow precomputation of f-statistic basis.
This can greatly reduce computation costs.
b) qpAdm, qpWave, qpGraph support qpfstats output as input.
*** This is a much improved way of running with allsnps: YES. ***
c) A new experimental feature of qpGraph (halfscore: YES) allows
comparison of 2 phylogenies + a (weak) goodness of fit score. Be careful
if running with a large nnumber of populations and consider reducing block size say
blgsize: .005
v6.0
Many improvements/bugfixes since earlier release
v5.1
Some minor bugfixes and an upgrade that Stephan Schiffels asked for
v5.0
Nick's updates to 5.0
rolloff take variant chromosome numbers
A new parameter "numchrom" is available for rolloff. You can set chromosome number with this parameter.
This is an example:
numchrom: 28