CISI-IMC_publication

Scripts for CISI-IMC publication

analysis

ipynb files to perform analyses demonstrated in the manuscript. First line of each file indicates which figure it corresponds to.

code

python files contaning functions used in the codes in "analysis" folder.

• simulate_A: Simulating the decompression performance of barcoding matrix.
• smaf: Calculating dictionary from single cell expresssion data.
• utils: other functions

env

yml file to create a python environment for CISI-IMC.

report

Rmd files to produce the plots in the manuscript.