Scripts for CISI-IMC publication
ipynb files to perform analyses demonstrated in the manuscript. First line of each file indicates which figure it corresponds to.
python files contaning functions used in the codes in "analysis" folder.
- simulate_A: Simulating the decompression performance of barcoding matrix.
- smaf: Calculating dictionary from single cell expresssion data.
- utils: other functions
yml file to create a python environment for CISI-IMC.
Rmd files to produce the plots in the manuscript.