Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Fix orthogonal indexing with a scalar #1947

Merged
merged 2 commits into from
Aug 14, 2024
Merged

Conversation

dcherian
Copy link
Contributor

@dcherian dcherian commented Jun 3, 2024

Fixes #1931

TODO:

  • Add unit tests and/or doctests in docstrings
  • Add docstrings and API docs for any new/modified user-facing classes and functions
  • Changes documented in docs/release.rst
  • GitHub Actions have all passed
  • Test coverage is 100% (Codecov passes)

@dcherian dcherian changed the base branch from v3 to main June 3, 2024 15:28
@dcherian dcherian closed this Jun 3, 2024
@dcherian dcherian reopened this Jun 3, 2024
@jhamman
Copy link
Member

jhamman commented Jun 3, 2024

Thanks @dcherian -- looks good to me. No idea why Appveyor isn't running though.

@zarr-developers/steering-council -- I don't have access to our appveyor account. Seems like another reason to address #1905

@dcherian
Copy link
Contributor Author

dcherian commented Jun 3, 2024

OK I'll try and add a hypothesis test for this later.

@dcherian
Copy link
Contributor Author

dcherian commented Jun 4, 2024

@jhamman I have reproduced the failure with a hypothesis test now (#1746 ).

This branch makes that test always pass (it seems like)

Should I point that PR at main or V3?

@jhamman
Copy link
Member

jhamman commented Jun 5, 2024

@dcherian - My preference is that we get #1746 into the v3 branch or both.

@jhamman jhamman added the V3 Affects the v3 branch label Jul 1, 2024
@joshmoore joshmoore removed the V3 Affects the v3 branch label Jul 11, 2024
@joshmoore
Copy link
Member

No idea why Appveyor isn't running though.

"AppVeyor was unable to build non-mergeable pull request" -- perhaps it was the change of the default branch?

@zarr-developers/steering-council -- I don't have access to our appveyor account. Seems like another reason to address #1905

Not sure how I log in either at this point?! (Things look to have changed)

I'd propose we get this and any other regressions out as 2.18.3 (ignoring the job failure).

Copy link

codecov bot commented Aug 14, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 99.98%. Comparing base (c72d0e2) to head (1b09c5e).
Report is 357 commits behind head on main.

Additional details and impacted files
@@           Coverage Diff           @@
##             main    #1947   +/-   ##
=======================================
  Coverage   99.98%   99.98%           
=======================================
  Files          38       38           
  Lines       14703    14714   +11     
=======================================
+ Hits        14701    14712   +11     
  Misses          2        2           
Files with missing lines Coverage Δ
zarr/core.py 100.00% <100.00%> (ø)
zarr/tests/test_core.py 99.94% <100.00%> (+<0.01%) ⬆️

@dcherian dcherian changed the title Fix 1931 Fix orthogonal indexing with a scalar Aug 14, 2024
@jhamman jhamman added this to the 2.18.3 milestone Aug 14, 2024
@jhamman jhamman merged commit 11fd8db into zarr-developers:main Aug 14, 2024
18 checks passed
jhamman added a commit that referenced this pull request Oct 11, 2024
* Bump pypa/gh-action-pypi-publish from 1.8.10 to 1.8.11 (#1586)

Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.10 to 1.8.11.
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.8.10...v1.8.11)

---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump conda-incubator/setup-miniconda from 2.3.0 to 3.0.1 (#1587)

Bumps [conda-incubator/setup-miniconda](https://github.com/conda-incubator/setup-miniconda) from 2.3.0 to 3.0.1.
- [Release notes](https://github.com/conda-incubator/setup-miniconda/releases)
- [Changelog](https://github.com/conda-incubator/setup-miniconda/blob/main/CHANGELOG.md)
- [Commits](https://github.com/conda-incubator/setup-miniconda/compare/v2.3.0...v3.0.1)

---
updated-dependencies:
- dependency-name: conda-incubator/setup-miniconda
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* * Cache result of FSStore._fsspec_installed (#1581)

Prevent runtime-overhead in doing this check multiple times

* Bump version of black in pre-commit (#1559)

* Use list comprehension where applicable (#1555)

Even if this is only a test, list comprehensions are faster than
repeatedly call append().

Also use tuple instead of list when possible.

Co-authored-by: Davis Bennett <[email protected]>

* Bump numcodecs from 0.11.0 to 0.12.1 (#1580)

Bumps [numcodecs](https://github.com/zarr-developers/numcodecs) from 0.11.0 to 0.12.1.
- [Release notes](https://github.com/zarr-developers/numcodecs/releases)
- [Changelog](https://github.com/zarr-developers/numcodecs/blob/main/docs/release.rst)
- [Commits](https://github.com/zarr-developers/numcodecs/compare/v0.11.0...v0.12.1)

---
updated-dependencies:
- dependency-name: numcodecs
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <[email protected]>

* Use format specification mini-language to format string (#1558)

Co-authored-by: Joe Hamman <[email protected]>

* Single startswith() call instead of multiple ones (#1556)

It's faster and probably more readable.

Co-authored-by: Davis Bennett <[email protected]>
Co-authored-by: Joe Hamman <[email protected]>

* Bump pymongo from 4.5.0 to 4.6.1 (#1585)

Bumps [pymongo](https://github.com/mongodb/mongo-python-driver) from 4.5.0 to 4.6.1.
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](https://github.com/mongodb/mongo-python-driver/compare/4.5.0...4.6.1)

---
updated-dependencies:
- dependency-name: pymongo
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <[email protected]>

* Move codespell options around (#1196)

Starting with codespell 2.2.2, options can be specified in
`pyrpoject.toml` in addition to `setup.cfg`:
https://github.com/codespell-project/codespell#using-a-config-file

Specifying options in a config file instead of command line options in
`.pre-commit-config.yaml` ensures codespell uses the same options when
run as pre-commit hook or from the command line in the repository root
directory.

* Bump fsspec from 2023.10.0 to 2023.12.1 (#1600)

* Bump fsspec from 2023.10.0 to 2023.12.1

Bumps [fsspec](https://github.com/fsspec/filesystem_spec) from 2023.10.0 to 2023.12.1.
- [Commits](https://github.com/fsspec/filesystem_spec/compare/2023.10.0...2023.12.1)

---
updated-dependencies:
- dependency-name: fsspec
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>

* Update s3fs as well

* Fix s3fs

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Josh Moore <[email protected]>

* Add type hints to zarr.create (#1536)

* Add type hints to zarr.create

* Use protocol for MetaArray

* Use protocol for Synchronizer

* Fix Path typing

* Add release note

* Fix dim separator typing

* Ignore ... in coverage reporting

* Fix chunk typing

---------

Co-authored-by: Davis Bennett <[email protected]>

* Remove unused mypy ignore comments (#1602)

Co-authored-by: Davis Bennett <[email protected]>

* Bump actions/setup-python from 4.7.1 to 5.0.0 (#1605)

Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4.7.1 to 5.0.0.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](https://github.com/actions/setup-python/compare/v4.7.1...v5.0.0)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <[email protected]>

* Bump github/codeql-action from 2 to 3 (#1609)

Bumps [github/codeql-action](https://github.com/github/codeql-action) from 2 to 3.
- [Release notes](https://github.com/github/codeql-action/releases)
- [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md)
- [Commits](https://github.com/github/codeql-action/compare/v2...v3)

---
updated-dependencies:
- dependency-name: github/codeql-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* chore: update pre-commit hooks (#1448)

* chore: update pre-commit hooks

updates:
- https://github.com/charliermarsh/ruff-pre-commit → https://github.com/astral-sh/ruff-pre-commit
- [github.com/astral-sh/ruff-pre-commit: v0.0.224 → v0.1.8](https://github.com/astral-sh/ruff-pre-commit/compare/v0.0.224...v0.1.8)
- [github.com/psf/black: 23.10.1 → 23.12.0](https://github.com/psf/black/compare/23.10.1...23.12.0)
- [github.com/codespell-project/codespell: v2.2.5 → v2.2.6](https://github.com/codespell-project/codespell/compare/v2.2.5...v2.2.6)
- [github.com/pre-commit/pre-commit-hooks: v4.4.0 → v4.5.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.4.0...v4.5.0)
- [github.com/pre-commit/mirrors-mypy: v1.3.0 → v1.7.1](https://github.com/pre-commit/mirrors-mypy/compare/v1.3.0...v1.7.1)

* Attempt to fix ruff

* Use isinstance

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Josh Moore <[email protected]>

* chore: update pre-commit hooks (#1618)

updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.8 → v0.1.9](https://github.com/astral-sh/ruff-pre-commit/compare/v0.1.8...v0.1.9)
- [github.com/psf/black: 23.12.0 → 23.12.1](https://github.com/psf/black/compare/23.12.0...23.12.1)
- [github.com/pre-commit/mirrors-mypy: v1.7.1 → v1.8.0](https://github.com/pre-commit/mirrors-mypy/compare/v1.7.1...v1.8.0)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* Bump fsspec from 2023.12.1 to 2023.12.2 (#1606)

* Bump fsspec from 2023.12.1 to 2023.12.2

Bumps [fsspec](https://github.com/fsspec/filesystem_spec) from 2023.12.1 to 2023.12.2.
- [Commits](https://github.com/fsspec/filesystem_spec/compare/2023.12.1...2023.12.2)

---
updated-dependencies:
- dependency-name: fsspec
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>

* Update requirements_dev_optional.txt

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <[email protected]>

* Bump pytest-doctestplus from 1.0.0 to 1.1.0 (#1619)

Bumps [pytest-doctestplus](https://github.com/scientific-python/pytest-doctestplus) from 1.0.0 to 1.1.0.
- [Release notes](https://github.com/scientific-python/pytest-doctestplus/releases)
- [Changelog](https://github.com/scientific-python/pytest-doctestplus/blob/main/CHANGES.rst)
- [Commits](https://github.com/scientific-python/pytest-doctestplus/compare/v1.0.0...v1.1.0)

---
updated-dependencies:
- dependency-name: pytest-doctestplus
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump pytest from 7.4.3 to 7.4.4 (#1622)

* chore: update pre-commit hooks (#1626)

updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.9 → v0.1.11](https://github.com/astral-sh/ruff-pre-commit/compare/v0.1.9...v0.1.11)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* Create TEAM.md (#1628)

* Drop python 3.8 and numpy 1.20 (#1557)

* Drop 3.8 and add 3.12

* Try removing line_profiler

* Also bump the minimal numpy to 1.21

* Drop 3.12 again

* Revert "Try removing line_profiler"

This reverts commit 837854bec99a9d25aece2ead9666f01690d228cc.

* Update release.rst

---------

Co-authored-by: Joe Hamman <[email protected]>
Co-authored-by: jakirkham <[email protected]>

* Add Norman Rzepka to core-dev team (#1630)

* chore: update pre-commit hooks (#1633)

updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.11 → v0.1.13](https://github.com/astral-sh/ruff-pre-commit/compare/v0.1.11...v0.1.13)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* Bump actions/download-artifact from 3 to 4 (#1611)

* Bump actions/download-artifact from 3 to 4

Bumps [actions/download-artifact](https://github.com/actions/download-artifact) from 3 to 4.
- [Release notes](https://github.com/actions/download-artifact/releases)
- [Commits](https://github.com/actions/download-artifact/compare/v3...v4)

---
updated-dependencies:
- dependency-name: actions/download-artifact
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>

* Also bump upload-artifact

see https://github.com/actions/download-artifact?tab=readme-ov-file#breaking-changes

> Downloading artifacts that were created from action/upload-artifact@v3 and below are not supported.

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <[email protected]>
Co-authored-by: Josh Moore <[email protected]>

* Update tutorial.rst to include section about accessing Zip Files on S3 (#1615)

* Update tutorial.rst to include section about accessing Zip Files on S3

Per discussion here, add information about about accessing zip files on s3:
https://github.com/zarr-developers/zarr-python/discussions/1613

* Update release.rst

* Implement d-v-b's suggestions

---------

Co-authored-by: Davis Bennett <[email protected]>
Co-authored-by: Josh Moore <[email protected]>

* doc(v3): add v3 roadmap and design document (#1583)

* doc(v3): add v3 roadmap and design document

* Update v3-roadmap-and-design.md

* updates after latest round of reviews

* Update v3-roadmap-and-design.md

Co-authored-by: Norman Rzepka <[email protected]>

* Update v3-roadmap-and-design.md

Co-authored-by: Sanket Verma <[email protected]>

---------

Co-authored-by: Norman Rzepka <[email protected]>
Co-authored-by: Sanket Verma <[email protected]>

* chore: update pre-commit hooks (#1636)

updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.13 → v0.1.14](https://github.com/astral-sh/ruff-pre-commit/compare/v0.1.13...v0.1.14)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* Fix zarr sync (#1663)

This patch removes fasteners and disables zarr.sync which uses process and thread

Co-authored-by: Wei Ouyang <[email protected]>

* Update release.rst (#1621)

* Update release.rst

* Update release.rst

* Change 2.16.2 → 2.17.0

* Update moto for test_s3

* Skip bsddb3 tests to prevent warning failure

* Fix more user warning tests

* Fix even more user warning tests

* Skip coverage for importorskips

* Move to have_X skip method for deps

* Update release.rst (PR#1663)

* Fix test_core.py 'compile' issues

* Add black formatting

* Drop Windows/3.9 build due to unrelated failures

* fix typo

---------

Co-authored-by: Davis Bennett <[email protected]>
Co-authored-by: Josh Moore <[email protected]>

* Bump numpy from 1.24.3 to 1.26.1 (#1543)

Bumps [numpy](https://github.com/numpy/numpy) from 1.24.3 to 1.26.1.
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](https://github.com/numpy/numpy/compare/v1.24.3...v1.26.1)

---
updated-dependencies:
- dependency-name: numpy
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Davis Bennett <[email protected]>
Co-authored-by: Josh Moore <[email protected]>
Co-authored-by: Joe Hamman <[email protected]>

* chore: update pre-commit hooks (#1642)

* chore: update pre-commit hooks

updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.14 → v0.2.1](https://github.com/astral-sh/ruff-pre-commit/compare/v0.1.14...v0.2.1)
- [github.com/psf/black: 23.12.1 → 24.2.0](https://github.com/psf/black/compare/23.12.1...24.2.0)

* run black incl. comments for '...'

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Josh Moore <[email protected]>

* Bump ipywidgets from 8.1.0 to 8.1.1 (#1538)

Bumps [ipywidgets](https://github.com/jupyter-widgets/ipywidgets) from 8.1.0 to 8.1.1.
- [Release notes](https://github.com/jupyter-widgets/ipywidgets/releases)
- [Commits](https://github.com/jupyter-widgets/ipywidgets/compare/8.1.0...8.1.1)

---
updated-dependencies:
- dependency-name: ipywidgets
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Davis Bennett <[email protected]>
Co-authored-by: Josh Moore <[email protected]>

* Proper argument for numpy.reshape (#1425)

`numpy.reshape` not only accepts a tuple of ints, but also a simple int.

Besides `(10)` is not a tuple and is identical to `10`, unlike `(10,)`.

* Bump ipywidgets from 8.1.1 to 8.1.2 (#1666)

Bumps [ipywidgets](https://github.com/jupyter-widgets/ipywidgets) from 8.1.1 to 8.1.2.
- [Release notes](https://github.com/jupyter-widgets/ipywidgets/releases)
- [Commits](https://github.com/jupyter-widgets/ipywidgets/compare/8.1.1...8.1.2)

---
updated-dependencies:
- dependency-name: ipywidgets
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* docs: ZIP-related tweaks (#1641)

* docs: use 'ZIP archive' instead of 'zip file'; clarify utility of caching in s3 + ZIP example; style

* docs: update release notes, correct spelling of greg lee's name in past release notes, and fix markup in past release notes

* docs: use 'ZIP archive' instead of 'zip file'; clarify utility of caching in s3 + ZIP example; style

* docs: update release notes, correct spelling of greg lee's name in past release notes, and fix markup in past release notes

* Bump numpy from 1.26.1 to 1.26.4 (#1669)

Bumps [numpy](https://github.com/numpy/numpy) from 1.26.1 to 1.26.4.
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](https://github.com/numpy/numpy/compare/v1.26.1...v1.26.4)

---
updated-dependencies:
- dependency-name: numpy
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Change occurrences of % and format() to f-strings (#1423)

Co-authored-by: Joe Hamman <[email protected]>
Co-authored-by: Josh Moore <[email protected]>

* chore: update pre-commit hooks (#1672)

updates:
- [github.com/astral-sh/ruff-pre-commit: v0.2.1 → v0.2.2](https://github.com/astral-sh/ruff-pre-commit/compare/v0.2.1...v0.2.2)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* Bump pymongo from 4.6.1 to 4.6.2 (#1674)

Bumps [pymongo](https://github.com/mongodb/mongo-python-driver) from 4.6.1 to 4.6.2.
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/4.6.2/doc/changelog.rst)
- [Commits](https://github.com/mongodb/mongo-python-driver/compare/4.6.1...4.6.2)

---
updated-dependencies:
- dependency-name: pymongo
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump conda-incubator/setup-miniconda from 3.0.1 to 3.0.2 (#1677)

Bumps [conda-incubator/setup-miniconda](https://github.com/conda-incubator/setup-miniconda) from 3.0.1 to 3.0.2.
- [Release notes](https://github.com/conda-incubator/setup-miniconda/releases)
- [Changelog](https://github.com/conda-incubator/setup-miniconda/blob/main/CHANGELOG.md)
- [Commits](https://github.com/conda-incubator/setup-miniconda/compare/v3.0.1...v3.0.2)

---
updated-dependencies:
- dependency-name: conda-incubator/setup-miniconda
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Update config.yml with Zulip

* Type dimension separator (#1620)

Co-authored-by: Davis Bennett <[email protected]>

* Replace Gitter with new Zulip Chat link (#1685)

* Replace Gitter with Zulip

* Replace Gitter with Zulip in remaining places

* Bump redis from 5.0.1 to 5.0.2 (#1688)

Bumps [redis](https://github.com/redis/redis-py) from 5.0.1 to 5.0.2.
- [Release notes](https://github.com/redis/redis-py/releases)
- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)
- [Commits](https://github.com/redis/redis-py/compare/v5.0.1...v5.0.2)

---
updated-dependencies:
- dependency-name: redis
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump pypa/gh-action-pypi-publish from 1.8.11 to 1.8.12 (#1691)

Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.11 to 1.8.12.
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.8.11...v1.8.12)

---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump pytest-doctestplus from 1.1.0 to 1.2.0 (#1693)

Bumps [pytest-doctestplus](https://github.com/scientific-python/pytest-doctestplus) from 1.1.0 to 1.2.0.
- [Release notes](https://github.com/scientific-python/pytest-doctestplus/releases)
- [Changelog](https://github.com/scientific-python/pytest-doctestplus/blob/main/CHANGES.rst)
- [Commits](https://github.com/scientific-python/pytest-doctestplus/compare/v1.1.0...v1.2.0)

---
updated-dependencies:
- dependency-name: pytest-doctestplus
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Fix RTD build (#1694)

* Update release.rst for v2.17.1 (#1673)

* Update release.rst for v2.17.1

* Change the copyright year from 2023 → 2024.

* Update release.rst for v2.17.1

* Bump pytest-timeout from 2.2.0 to 2.3.1 (#1697)

Bumps [pytest-timeout](https://github.com/pytest-dev/pytest-timeout) from 2.2.0 to 2.3.1.
- [Commits](https://github.com/pytest-dev/pytest-timeout/compare/2.2.0...2.3.1)

---
updated-dependencies:
- dependency-name: pytest-timeout
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump conda-incubator/setup-miniconda from 3.0.2 to 3.0.3 (#1690)

Bumps [conda-incubator/setup-miniconda](https://github.com/conda-incubator/setup-miniconda) from 3.0.2 to 3.0.3.
- [Release notes](https://github.com/conda-incubator/setup-miniconda/releases)
- [Changelog](https://github.com/conda-incubator/setup-miniconda/blob/main/CHANGELOG.md)
- [Commits](https://github.com/conda-incubator/setup-miniconda/compare/v3.0.2...v3.0.3)

---
updated-dependencies:
- dependency-name: conda-incubator/setup-miniconda
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Sanket Verma <[email protected]>

* docs(tutorial.rst): fix link to GCSMap (#1689)

* Update installation.rst stating version support policy (#1665)

* Update installation.rst stating version support policy

* Update docs/installation.rst

Co-authored-by: Joe Hamman <[email protected]>

* Update docs/installation.rst

---------

Co-authored-by: Joe Hamman <[email protected]>

* Bump pypa/gh-action-pypi-publish from 1.8.12 to 1.8.14 (#1700)

Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.12 to 1.8.14.
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.8.12...v1.8.14)

---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump pytest-doctestplus from 1.2.0 to 1.2.1 (#1699)

Bumps [pytest-doctestplus](https://github.com/scientific-python/pytest-doctestplus) from 1.2.0 to 1.2.1.
- [Release notes](https://github.com/scientific-python/pytest-doctestplus/releases)
- [Changelog](https://github.com/scientific-python/pytest-doctestplus/blob/main/CHANGES.rst)
- [Commits](https://github.com/scientific-python/pytest-doctestplus/compare/v1.2.0...v1.2.1)

---
updated-dependencies:
- dependency-name: pytest-doctestplus
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Sanket Verma <[email protected]>

* Bump redis from 5.0.2 to 5.0.3 (#1698)

Bumps [redis](https://github.com/redis/redis-py) from 5.0.2 to 5.0.3.
- [Release notes](https://github.com/redis/redis-py/releases)
- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)
- [Commits](https://github.com/redis/redis-py/compare/v5.0.2...v5.0.3)

---
updated-dependencies:
- dependency-name: redis
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Sanket Verma <[email protected]>

* Add Python 3.12 to CI (#1719)

* Update python-package.yml

* bump numpy versions

* bump min python version

* Update release.rst

* Bump pytest-cov from 4.1.0 to 5.0.0 (#1722)

Bumps [pytest-cov](https://github.com/pytest-dev/pytest-cov) from 4.1.0 to 5.0.0.
- [Changelog](https://github.com/pytest-dev/pytest-cov/blob/master/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest-cov/compare/v4.1.0...v5.0.0)

---
updated-dependencies:
- dependency-name: pytest-cov
  dependency-type: direct:development
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* chore: update pre-commit hooks (#1708)

updates:
- [github.com/astral-sh/ruff-pre-commit: v0.2.2 → v0.3.3](https://github.com/astral-sh/ruff-pre-commit/compare/v0.2.2...v0.3.3)
- [github.com/psf/black: 24.2.0 → 24.3.0](https://github.com/psf/black/compare/24.2.0...24.3.0)
- [github.com/pre-commit/mirrors-mypy: v1.8.0 → v1.9.0](https://github.com/pre-commit/mirrors-mypy/compare/v1.8.0...v1.9.0)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Sanket Verma <[email protected]>

* chore: update pre-commit hooks (#1723)

updates:
- [github.com/astral-sh/ruff-pre-commit: v0.3.3 → v0.3.4](https://github.com/astral-sh/ruff-pre-commit/compare/v0.3.3...v0.3.4)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* Fix release notes (following #1719) (#1725)

* Override ipython repr methods. (#1724)

Closes #1716

This avoids expensive lookups against object stores.

* Bump pymongo from 4.6.2 to 4.6.3 (#1729)

* Remove v1 and v2 specification (#1582)

* Remove v1 and v2 specification

* fix warning

---------

Co-authored-by: Davis Bennett <[email protected]>

* chore: update pre-commit hooks (#1738)

updates:
- [github.com/astral-sh/ruff-pre-commit: v0.3.4 → v0.3.5](https://github.com/astral-sh/ruff-pre-commit/compare/v0.3.4...v0.3.5)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* Optimize Array.info and Group.info (#1733)

* Optimize Array.info.

Avoid repeated computes of the same value (getsize)

* Don't have InfoReporter query items twice.

Apparently IPython will run both __repr__ and _repr_html_
so we were calling `getsize` twice.

* Group too

* Apply suggestions from code review

Co-authored-by: Joe Hamman <[email protected]>

---------

Co-authored-by: Joe Hamman <[email protected]>

* Bump actions/setup-python from 5.0.0 to 5.1.0 (#1736)

Bumps [actions/setup-python](https://github.com/actions/setup-python) from 5.0.0 to 5.1.0.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](https://github.com/actions/setup-python/compare/v5.0.0...v5.1.0)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Couple fixes (#1737)

* Use `is` when comparing `type` of two objects

* Unnecessary `None` provided as default

* Fix tests with Pytest 8 (#1714)

* Bump pytest version

* Use editable install when testing

---------

Co-authored-by: Sanket Verma <[email protected]>

* Avoid redundant __contains__ (#1739)

Let's try grabbing the array.json and group.json files,
and check for `*NotFoundError`, instead of using contains first.

Co-authored-by: Davis Bennett <[email protected]>

* Array & Group: Use already loaded attributes to populate cache. (#1734)

* Array: Use already loaded attributes to populate cache.

* Group: Use already loaded attributes to populate cache.

* Fix

* Add release note

* Optimize attribute setting (#1741)

* Optimize attribute setting

* Add release note

---------

Co-authored-by: Davis Bennett <[email protected]>

* Make sure fs exceptions are raised if not MissingFs exceptions (clone) (#1604)

* Make sure fs exceptions are raised if not Missing

* lint

* add missing argument in tests, lint

* clear memory filesystem during test

* improve commenting

* add memory_store fixture, getitems performance

* Update release.rst

* improve FSStore.test_exception coverage

---------

Co-authored-by: Martin Durant <[email protected]>
Co-authored-by: Joe Hamman <[email protected]>
Co-authored-by: Josh Moore <[email protected]>
Co-authored-by: Sanket Verma <[email protected]>

* chore(release): update changelog for 2.17.2 (#1775)

* chore(docs): reset release notes as unreleased (#1776)

* Bump codecov/codecov-action from 3 to 4 (#1647)

* Bump codecov/codecov-action from 3 to 4

Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 3 to 4.
- [Release notes](https://github.com/codecov/codecov-action/releases)
- [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md)
- [Commits](https://github.com/codecov/codecov-action/compare/v3...v4)

---
updated-dependencies:
- dependency-name: codecov/codecov-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>

* Set codecov env

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Josh Moore <[email protected]>

* Update release.rst for v2.17.2 (#1778)

* Update release.rst for v2.17.2

* Minor edits

---------

Co-authored-by: Joe Hamman <[email protected]>

* Deprecate the experimental v3 implementation (#1802)

* deprecate(exp-v3): Add a future warning about the pending removal of the experimental v3 implementation

* ignore warning

* add test

* chore: update pre-commit hooks (#1779)

updates:
- [github.com/astral-sh/ruff-pre-commit: v0.3.5 → v0.3.7](https://github.com/astral-sh/ruff-pre-commit/compare/v0.3.5...v0.3.7)
- [github.com/psf/black: 24.3.0 → 24.4.0](https://github.com/psf/black/compare/24.3.0...24.4.0)
- [github.com/pre-commit/pre-commit-hooks: v4.5.0 → v4.6.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.5.0...v4.6.0)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* Fix `is_total_slice` for size-1 dimensions (#1800)

Closes #1730

Co-authored-by: Ryan Abernathey <[email protected]>
Co-authored-by: Joe Hamman <[email protected]>

* add note to the top of the release page noting the plan for 2.18.* and 3.0 (#1816)

* Bump conda-incubator/setup-miniconda from 3.0.3 to 3.0.4 (#1824)

Bumps [conda-incubator/setup-miniconda](https://github.com/conda-incubator/setup-miniconda) from 3.0.3 to 3.0.4.
- [Release notes](https://github.com/conda-incubator/setup-miniconda/releases)
- [Changelog](https://github.com/conda-incubator/setup-miniconda/blob/main/CHANGELOG.md)
- [Commits](https://github.com/conda-incubator/setup-miniconda/compare/v3.0.3...v3.0.4)

---
updated-dependencies:
- dependency-name: conda-incubator/setup-miniconda
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* dep(docs): deprecate experimental v3 support in docs (#1807)

* dep(docs): deprecate experimental v3 support in docs

* Apply suggestions from code review

Co-authored-by: Josh Moore <[email protected]>
Co-authored-by: Sanket Verma <[email protected]>

---------

Co-authored-by: Josh Moore <[email protected]>
Co-authored-by: Sanket Verma <[email protected]>

* Bump h5py from 3.10.0 to 3.11.0 (#1786)

Bumps [h5py](https://github.com/h5py/h5py) from 3.10.0 to 3.11.0.
- [Release notes](https://github.com/h5py/h5py/releases)
- [Changelog](https://github.com/h5py/h5py/blob/master/docs/release_guide.rst)
- [Commits](https://github.com/h5py/h5py/compare/3.10.0...3.11.0)

---
updated-dependencies:
- dependency-name: h5py
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <[email protected]>

* Bump redis from 5.0.3 to 5.0.4 (#1810)

Bumps [redis](https://github.com/redis/redis-py) from 5.0.3 to 5.0.4.
- [Release notes](https://github.com/redis/redis-py/releases)
- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)
- [Commits](https://github.com/redis/redis-py/compare/v5.0.3...v5.0.4)

---
updated-dependencies:
- dependency-name: redis
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* deprecate(stores): add deprecation warnings to stores that we plan to remove in v3 (#1801)

* deprecate(stores): add deprecation warnings to DBMStore, LMDBStore, SQLiteStore, MongoDBStore, RedisStore, and ABSStore

* filter warnings in pytest config

* more deprecation warnings in docstrings

* add release note

* use np.inf instead of PINF/NINF (#1842)

* use np.inf instead of PINF/NINF

* update release notes

* chore: update pre-commit hooks (#1825)

updates:
- [github.com/astral-sh/ruff-pre-commit: v0.4.1 → v0.4.3](https://github.com/astral-sh/ruff-pre-commit/compare/v0.4.1...v0.4.3)
- [github.com/psf/black: 24.4.0 → 24.4.2](https://github.com/psf/black/compare/24.4.0...24.4.2)
- [github.com/pre-commit/mirrors-mypy: v1.9.0 → v1.10.0](https://github.com/pre-commit/mirrors-mypy/compare/v1.9.0...v1.10.0)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* Enable ruff/bugbear rules (B) and fix issues (#1702)

* Enable ruff/bugbear rules (B)

As suggested by Repo-Review.

* Fix ruff/bugbear issue (B007)

B007 Loop control variable `key` not used within loop body

https://docs.astral.sh/ruff/rules/unused-loop-control-variable/

* Fix ruff/bugbear issue (B015)

B015 Pointless comparison. Did you mean to assign a value?
     Otherwise, prepend `assert` or remove it.

https://docs.astral.sh/ruff/rules/useless-comparison/

* Fix ruff/bugbear issues (B028)

B028 No explicit `stacklevel` keyword argument found

https://docs.astral.sh/ruff/rules/no-explicit-stacklevel/

* Fix ruff/bugbear issues (B904)

B904 Within an `except` clause, raise exceptions with `raise ... from err` or
     `raise ... from None` to distinguish them from errors in exception handling

https://docs.astral.sh/ruff/rules/raise-without-from-inside-except/

* Document changes in docs/release.rst

* Disable ruff/bugbear rule (B017)

B017 `pytest.raises(Exception)` should be considered evil

https://docs.astral.sh/ruff/rules/assert-raises-exception/

---------

Co-authored-by: Joe Hamman <[email protected]>

* Release notes for 2.18.0 (#1843)

* doc: cleanup release notes for 2.18.0

* Update release.rst (#1850)

* Group dependabot updates (#1854)

* chore: update pre-commit hooks (#1876)

updates:
- [github.com/astral-sh/ruff-pre-commit: v0.4.3 → v0.4.4](https://github.com/astral-sh/ruff-pre-commit/compare/v0.4.3...v0.4.4)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* Fix a regression with scalar indexing due to #1800 (#1875)

* release notes for 2.18.1 (#1885)

* reset release notes (#1886)

* Add zstd to old V3 supported codecs (#1914)

* add zstd to old V3 supported codecs

* get to full test coverage and add release note

* fix pre-commit

* doc: update release notes for 2.18.2 (#1915)

* Drop support for Python 3.9

* Revert "Drop support for Python 3.9"

This reverts commit a054afbbdaf7c8560d0ce5df77af969bc863e335.

* Update TEAM.md (#2071)

* [v2] Fix doctests with numpy 2.0 (#2073)

* Fix version number in built docs (#2044)

* Fix orthogonal indexing with scalar. (#1947)

Co-authored-by: David Stansby <[email protected]>

* Bump the requirements group across 1 directory with 7 updates (#2092)

Bumps the requirements group with 7 updates in the / directory:

| Package | From | To |
| --- | --- | --- |
| [numpy](https://github.com/numpy/numpy) | `1.26.4` | `2.0.1` |
| [ipywidgets](https://github.com/jupyter-widgets/ipywidgets) | `8.1.2` | `8.1.3` |
| [setuptools-scm](https://github.com/pypa/setuptools_scm) | `8.0.4` | `8.1.0` |
| [pytest](https://github.com/pytest-dev/pytest) | `8.1.1` | `8.3.2` |
| [lmdb](https://github.com/jnwatson/py-lmdb) | `1.4.1` | `1.5.1` |
| [redis](https://github.com/redis/redis-py) | `5.0.4` | `5.0.8` |
| [pymongo](https://github.com/mongodb/mongo-python-driver) | `4.6.3` | `4.8.0` |



Updates `numpy` from 1.26.4 to 2.0.1
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](https://github.com/numpy/numpy/compare/v1.26.4...v2.0.1)

Updates `ipywidgets` from 8.1.2 to 8.1.3
- [Release notes](https://github.com/jupyter-widgets/ipywidgets/releases)
- [Commits](https://github.com/jupyter-widgets/ipywidgets/compare/8.1.2...8.1.3)

Updates `setuptools-scm` from 8.0.4 to 8.1.0
- [Release notes](https://github.com/pypa/setuptools_scm/releases)
- [Changelog](https://github.com/pypa/setuptools_scm/blob/main/CHANGELOG.md)
- [Commits](https://github.com/pypa/setuptools_scm/compare/v8.0.4...v8.1.0)

Updates `pytest` from 8.1.1 to 8.3.2
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/8.1.1...8.3.2)

Updates `lmdb` from 1.4.1 to 1.5.1
- [Changelog](https://github.com/jnwatson/py-lmdb/blob/master/ChangeLog)
- [Commits](https://github.com/jnwatson/py-lmdb/compare/py-lmdb_1.4.1...py-lmdb_1.5.1)

Updates `redis` from 5.0.4 to 5.0.8
- [Release notes](https://github.com/redis/redis-py/releases)
- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)
- [Commits](https://github.com/redis/redis-py/compare/v5.0.4...v5.0.8)

Updates `pymongo` from 4.6.3 to 4.8.0
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](https://github.com/mongodb/mongo-python-driver/compare/4.6.3...4.8.0)

---
updated-dependencies:
- dependency-name: numpy
  dependency-type: direct:development
  update-type: version-update:semver-major
  dependency-group: requirements
- dependency-name: ipywidgets
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: requirements
- dependency-name: setuptools-scm
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: requirements
- dependency-name: pytest
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: requirements
- dependency-name: lmdb
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: requirements
- dependency-name: redis
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: requirements
- dependency-name: pymongo
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: requirements
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump the actions group with 2 updates (#2087)

Bumps the actions group with 2 updates: [actions/setup-python](https://github.com/actions/setup-python) and [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).


Updates `actions/setup-python` from 5.1.0 to 5.1.1
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](https://github.com/actions/setup-python/compare/v5.1.0...v5.1.1)

Updates `pypa/gh-action-pypi-publish` from 1.8.14 to 1.9.0
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.8.14...v1.9.0)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: actions
- dependency-name: pypa/gh-action-pypi-publish
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: actions
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* [v2] Drop support for Python 3.9 (#2074)

* Drop support for Python 3.9

* Ignore B905 ruff rule

* Fix release notes

* Fix Array.__array__ for numpy 2.1 (#2106)

* Fix Array.__array__ for numpy 2.1

* Add changelog

* Depend on np.array for array coercions

* Bump test version of numcodecs (#2114)

* Bump test version of numcodecs

* Fix test for numcodecs 0.13

* fix: numpy 1.24 compat for Array.__array__ (#2123)

* Deprecate N5Store (#2103)

* deprecate(n5): add deprecation warning to N5Store

* also deprecate N5FSStore

* docs

* fix doc

* Run tests on numpy 1.23 (#2124)

* Bump the requirements group across 1 directory with 3 updates (#2129)

Bumps the requirements group with 3 updates in the / directory: [numpy](https://github.com/numpy/numpy), [ipywidgets](https://github.com/jupyter-widgets/ipywidgets) and [azure-storage-blob](https://github.com/Azure/azure-sdk-for-python).


Updates `numpy` from 2.0.1 to 2.1.0
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](https://github.com/numpy/numpy/compare/v2.0.1...v2.1.0)

Updates `ipywidgets` from 8.1.3 to 8.1.5
- [Release notes](https://github.com/jupyter-widgets/ipywidgets/releases)
- [Commits](https://github.com/jupyter-widgets/ipywidgets/compare/8.1.3...8.1.5)

Updates `azure-storage-blob` from 12.16.0 to 12.21.0
- [Release notes](https://github.com/Azure/azure-sdk-for-python/releases)
- [Changelog](https://github.com/Azure/azure-sdk-for-python/blob/main/doc/esrp_release.md)
- [Commits](https://github.com/Azure/azure-sdk-for-python/compare/azure-storage-blob_12.16.0...azure-storage-blob_12.21.0)

---
updated-dependencies:
- dependency-name: numpy
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: requirements
- dependency-name: ipywidgets
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: requirements
- dependency-name: azure-storage-blob
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: requirements
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* chore: bump minimum numpy version to 1.24 (#2127)

* chore: bump minimum version to 1.24

* Update .github/workflows/python-package.yml

* Remove un-needed package installs in CI (#2095)

* Bump the actions group with 2 updates (#2146)

Bumps the actions group with 2 updates: [actions/setup-python](https://github.com/actions/setup-python) and [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).


Updates `actions/setup-python` from 5.1.1 to 5.2.0
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](https://github.com/actions/setup-python/compare/v5.1.1...v5.2.0)

Updates `pypa/gh-action-pypi-publish` from 1.9.0 to 1.10.0
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.9.0...v1.10.0)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: actions
- dependency-name: pypa/gh-action-pypi-publish
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: actions
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump numpy from 2.1.0 to 2.1.1 in the requirements group (#2151)

Bumps the requirements group with 1 update: [numpy](https://github.com/numpy/numpy).


Updates `numpy` from 2.1.0 to 2.1.1
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](https://github.com/numpy/numpy/compare/v2.1.0...v2.1.1)

---
updated-dependencies:
- dependency-name: numpy
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: requirements
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* chore(docs): update release notes ahead of 2.18.4 (#2152)

* Bump pypa/gh-action-pypi-publish from 1.10.0 to 1.10.1 in the actions group (#2161)

Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).


Updates `pypa/gh-action-pypi-publish` from 1.10.0 to 1.10.1
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.10.0...v1.10.1)

---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: actions
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* [docs] remove primary sidebar from tutorial (#2142)

* remove primary sidebar from tutorial

* lint

* Bump pytest from 8.3.2 to 8.3.3 in the requirements group (#2172)

Bumps the requirements group with 1 update: [pytest](https://github.com/pytest-dev/pytest).


Updates `pytest` from 8.3.2 to 8.3.3
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/8.3.2...8.3.3)

---
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: requirements
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump pypa/gh-action-pypi-publish in the actions group (#2220)

Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).


Updates `pypa/gh-action-pypi-publish` from 1.10.1 to 1.10.2
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.10.1...v1.10.2)

---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: actions
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Update TEAM.md (#2227)

* Bump the requirements group across 1 directory with 3 updates (#2284)

Bumps the requirements group with 3 updates in the / directory: [redis](https://github.com/redis/redis-py), [pymongo](https://github.com/mongodb/mongo-python-driver) and [h5py](https://github.com/h5py/h5py).


Updates `redis` from 5.0.8 to 5.1.0
- [Release notes](https://github.com/redis/redis-py/releases)
- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)
- [Commits](https://github.com/redis/redis-py/compare/v5.0.8...v5.1.0)

Updates `pymongo` from 4.8.0 to 4.10.0
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](https://github.com/mongodb/mongo-python-driver/compare/4.8.0...4.10.0)

Updates `h5py` from 3.11.0 to 3.12.1
- [Release notes](https://github.com/h5py/h5py/releases)
- [Changelog](https://github.com/h5py/h5py/blob/master/docs/release_guide.rst)
- [Commits](https://github.com/h5py/h5py/compare/3.11.0...3.12.1)

---
updated-dependencies:
- dependency-name: redis
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: requirements
- dependency-name: pymongo
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: requirements
- dependency-name: h5py
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: requirements
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump pymongo from 4.10.0 to 4.10.1 in the requirements group (#2288)

Bumps the requirements group with 1 update: [pymongo](https://github.com/mongodb/mongo-python-driver).


Updates `pymongo` from 4.10.0 to 4.10.1
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](https://github.com/mongodb/mongo-python-driver/compare/4.10.0...4.10.1)

---
updated-dependencies:
- dependency-name: pymongo
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: requirements
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Fix low contrast box titles (#2287) (#2292)

* Bump pypa/gh-action-pypi-publish in the actions group (#2304)

Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).


Updates `pypa/gh-action-pypi-publish` from 1.10.2 to 1.10.3
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.10.2...v1.10.3)

---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: actions
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump the requirements group with 2 updates (#2303)

Bumps the requirements group with 2 updates: [numpy](https://github.com/numpy/numpy) and [redis](https://github.com/redis/redis-py).


Updates `numpy` from 2.1.1 to 2.1.2
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](https://github.com/numpy/numpy/compare/v2.1.1...v2.1.2)

Updates `redis` from 5.1.0 to 5.1.1
- [Release notes](https://github.com/redis/redis-py/releases)
- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)
- [Commits](https://github.com/redis/redis-py/compare/v5.1.0...v5.1.1)

---
updated-dependencies:
- dependency-name: numpy
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: requirements
- dependency-name: redis
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: requirements
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump numcodecs from 0.13.0 to 0.13.1 in the requirements group (#2326)

Bumps the requirements group with 1 update: [numcodecs](https://github.com/zarr-developers/numcodecs).


Updates `numcodecs` from 0.13.0 to 0.13.1
- [Release notes](https://github.com/zarr-developers/numcodecs/releases)
- [Changelog](https://github.com/zarr-developers/numcodecs/blob/main/docs/release.rst)
- [Commits](https://github.com/zarr-developers/numcodecs/compare/v0.13.0...v0.13.1)

---
updated-dependencies:
- dependency-name: numcodecs
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: requirements
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* remove zarr.types from v2

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Janick Martinez Esturo <[email protected]>
Co-authored-by: David Stansby <[email protected]>
Co-authored-by: Dimitri Papadopoulos Orfanos <[email protected]>
Co-authored-by: Davis Bennett <[email protected]>
Co-authored-by: Josh Moore <[email protected]>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: jakirkham <[email protected]>
Co-authored-by: Jeff Peck <[email protected]>
Co-authored-by: Norman Rzepka <[email protected]>
Co-authored-by: Sanket Verma <[email protected]>
Co-authored-by: Hood Chatham <[email protected]>
Co-authored-by: Wei Ouyang <[email protected]>
Co-authored-by: Daniel Jahn (dahn) <[email protected]>
Co-authored-by: Deepak Cherian <[email protected]>
Co-authored-by: Ian Carroll <[email protected]>
Co-authored-by: Martin Durant <[email protected]>
Co-authored-by: Ryan Abernathey <[email protected]>
Co-authored-by: Jonny Saunders <[email protected]>
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
Status: Done
Development

Successfully merging this pull request may close these issues.

Regression in 2.18.x with size-1 slicing not resolved
4 participants