Skip to content

Issues: xryanglab/RiboCode

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

33 Open 14 Closed
33 Open 14 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

pvalue cutoff changes the predicted p-site, which is detected at site that is not the peak in metplot function
#65 opened Sep 11, 2024 by dougbarrows
metaplot import error Python 3.10
#64 opened Jun 23, 2024 by ericmalekos
Question on handling multimappers
#63 opened Apr 16, 2024 by mosi223
1
No obviously periodicity are detected from bam file when running metaplots step
#62 opened Mar 29, 2024 by DooYal
3
No R script supp
#61 opened Feb 29, 2024 by rabc9
Incorrect handling of hdf5 file for repeated runs of RiboCode
#59 opened Dec 4, 2023 by jdcla
RiboCode nf-core module
#58 opened Oct 20, 2023 by JackCurragh
h5py TypeError: No conversion path for dtype: dtype('<U18')
#57 opened Jul 20, 2023 by huipan1973
psites_number table is not generated with v1.2.15
#55 opened May 18, 2023 by hsinyenwu
1
ValueError: unsupported pickle protocol: 5 in metaplots
#54 opened Apr 28, 2023 by z626093820
1
ModuleNotFoundError: No module named 'fasta'
#53 opened Mar 27, 2023 by fulaibaowang
6
different transcripts of one gene
#52 opened Nov 22, 2022 by yx-xu
Question on adjusted P values reported in collapsed output
#51 opened Aug 16, 2022 by mt1022
2
remove PCR duplicate
#47 opened Jul 21, 2022 by yx-xu
2
Empty "transcripts_cds.txt" file
#46 opened Jun 8, 2022 by huguanjing
1
请问关于ORF预测结果中‘Psites_frame0_RPKM’代表什么意思？
#45 opened Jun 8, 2022 by z626093820
4
error in metaplots step
#43 opened May 27, 2022 by hugch2020
1
Whether multiple mapping affect ribocode result
#42 opened May 12, 2022 by Hilarialy
1
RiboCode_onestep crashes when calling detectORF
#41 opened May 11, 2022 by trum994
1
can't locate attribute: psites_number
#40 opened May 9, 2022 by trum994
1
ImportError: cannot import name 'PPoly' from partially initialized module 'scipy.interpolate' (most likely due to a circular import) (/home/zhai2/miniconda3/lib/python3.8/site-packages/scipy/interpolate/__init__.py)
#37 opened Mar 23, 2022 by z626093820
1
Read counts issues
#36 opened Mar 12, 2022 by tan5251
2
ValueError: Can't transform the genomic interval, please check!
#35 opened Mar 10, 2022 by z626093820
1
psite HDF5 file is saved in the wrong location
#31 opened Jan 6, 2022 by Roleren
2
Error in GTFupdate
#30 opened Nov 15, 2021 by lbwfff
1
ProTip! Follow long discussions with comments:>50.