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Merge devel to master for release 2.51.0 #474

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merged 4 commits into from
Oct 25, 2024
Merged

Merge devel to master for release 2.51.0 #474

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3251680
Banish more Sequels
ces Oct 16, 2024
31ee180
Merge pull request #472 from ces/pacbio28
kjsanger Oct 17, 2024
d1380d5
prep release 2.51.0
jmtcsngr Oct 25, 2024
1a8f5b6
Merge pull request #473 from jmtcsngr/devel
jmtcsngr Oct 25, 2024
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3 changes: 3 additions & 0 deletions Changes
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Original file line number Diff line number Diff line change
@@ -1,5 +1,8 @@
Unreleased

Release 2.51.0 (2024-10-25)
- Banish more Sequels

Release 2.50.1 (2024-10-04)
- Remove sequel specific references to Sequel from the code
- Following a release on 07/09/2024, see https://metacpan.org/dist/App-perlbrew/changes
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2 changes: 1 addition & 1 deletion bin/npg_pacbio_analysis_monitor.pl
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Expand Up @@ -78,7 +78,7 @@
push @init_args, api_uri => $api_uri;
}

my $monitor = WTSI::NPG::HTS::PacBio::Sequel::AnalysisMonitor->new
my $monitor = WTSI::NPG::HTS::PacBio::AnalysisMonitor->new
(@init_args);

my ($num_files, $num_published, $num_errors) =
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4 changes: 2 additions & 2 deletions bin/npg_pacbio_run_auxiliary.pl
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Expand Up @@ -93,10 +93,10 @@
my ($num_runs, $num_processed, $num_actioned, $num_errors);

if ($task eq 'delete') {
my $delete = WTSI::NPG::HTS::PacBio::Sequel::RunDeleteMonitor->new(@init_args);
my $delete = WTSI::NPG::HTS::PacBio::RunDeleteMonitor->new(@init_args);
($num_runs, $num_processed, $num_actioned, $num_errors) = $delete->delete_runs;
} elsif ($task eq 'audit') {
my $audit = WTSI::NPG::HTS::PacBio::Sequel::RunAuditor->new(@init_args);
my $audit = WTSI::NPG::HTS::PacBio::RunAuditor->new(@init_args);
($num_runs, $num_processed, $num_actioned, $num_errors) = $audit->check_runs;
}

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2 changes: 1 addition & 1 deletion bin/npg_pacbio_runmonitor.pl
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Expand Up @@ -43,7 +43,7 @@
'verbose' => \$verbose);


my $module = 'WTSI::NPG::HTS::PacBio::Sequel::RunMonitor';
my $module = 'WTSI::NPG::HTS::PacBio::RunMonitor';

if ($log4perl_config) {
Log::Log4perl::init($log4perl_config);
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2 changes: 1 addition & 1 deletion bin/npg_publish_pacbio_run.pl
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Expand Up @@ -56,7 +56,7 @@



my $module = 'WTSI::NPG::HTS::PacBio::Sequel::RunPublisher';
my $module = 'WTSI::NPG::HTS::PacBio::RunPublisher';

# Process CLI arguments
if ($log4perl_config) {
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2 changes: 1 addition & 1 deletion lib/WTSI/NPG/HTS/PacBio/MonitorBase.pm
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Expand Up @@ -3,7 +3,7 @@ package WTSI::NPG::HTS::PacBio::MonitorBase;
use Moose::Role;
use WTSI::NPG::iRODS;
use WTSI::DNAP::Warehouse::Schema;

use WTSI::NPG::HTS::PacBio::Sequel::APIClient;

our $VERSION = '';

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