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Add comments about test fix
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marcomoscasgr committed Nov 22, 2024
1 parent a4a87a3 commit 07b306c
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5 changes: 5 additions & 0 deletions t/lib/WTSI/NPG/HTS/Illumina/LogPublisherTest.pm
Original file line number Diff line number Diff line change
Expand Up @@ -63,6 +63,11 @@ sub publish_logs : Test(12) {
# test the RunPublisher
my $runfolder_path2 =
"t/data/illumina/sequence/150910_HS40_17550_A_C75BCANXX";

# The tracking database handle must be specified, otherwise when
# the tracking schema file exists in .npg folder it tries to retrieve
# the db credentials from it and connect to the database defined there.
# By setting it to 'undef', the code avoids the database route.
my $pub2 = WTSI::NPG::HTS::Illumina::LogPublisher->new
(irods => $irods,
runfolder_path => $runfolder_path2,
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