Release 0.18.0

Updated to handle NanoSeq by @jenniferliddle in #201

Release 0.17.1

release 0.17.1

Release 0.17.0

make the --nocall-quality option a boolean value instead of an integer

0.16.1

[0.16.1]
Bug fix: make the --nocall-quality option apply to QT tags too.

0.16.0

Fixed bug in read_names caused by overflow of 'float' by changing to 'double'
Added --nocall-quality option for NovaSeqX
Added Acknowledgements file to credit Illumina for test data

0.15.0

• Initial NovaSeqX support
• Fixed memory leak in check_bcl
• Make libgd optional
• Configuration fixes and improvements

0.14.0

• new substitution_analysis command
• minor changes to handle barcode files containing dual tags with only one tag such as "-ACGT" and "ACGT-"
• bcl_check: improved error handling
• include BC: tag (barcode) in RG (read group) header lines

0.13.1

bug fix: restore default output format to BAM

0.13.0

• new update command: rewrites querynames in a standard format
• output file type will match output file extension (not default to bam)
• removed reliance on samtools for tests

0.12.2

• uses new htslib header API (htslib >1.9)
• i2b option to automatically fix corrupted CBCL blocks
• standardise queryname format for NovaSeq (add prefix)