Segmentation and Cachix

* Added cachix bootstrap. Fixed bootstrap for Linux. * Pytest ini updated. * Change HDF to Fast5. * added Nix.test for our test work * [#83] Introduce abstractions for signals and fast5 files (#84) * [#83] Introduce abstractions for signals and fast5 files * Removed class method from FractionalizedSignal * Architecting signal and fast5 data organization Co-authored-by: Jessica Dunstan <[email protected]> Co-authored-by: Katie Doroschak <[email protected]>
uwmisl · Mar 12, 2021 · da7d02d · da7d02d
1 parent ecf2b67
commit da7d02d
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Showing 91 changed files with 6,117 additions and 3,718 deletions.
diff --git a/.gitignore b/.gitignore
@@ -117,6 +117,6 @@ CachedExtensions/
 User/
 
 # Mac
-tests/data/.DS_Store
-tests/.DS_Store
+src/tests/data/.DS_Store
+src/tests/.DS_Store
 .DS_Store
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -7,17 +7,17 @@ repos:
     hooks:
     -   id: black
         args: [--safe, --line-length=99]
-        name: Prettify code
+        name: Prettify Python Code
         always_run: true
 
     #####################################
     #       Sorts module imports        #
     #####################################
 -   repo: https://github.com/timothycrosley/isort
-    rev: master
+    rev: 5.6.4
     hooks:
     -   id: isort
-        name: Sort imports
+        name: Sort Python Imports
         always_run: false
         args: [--multi-line=3, --trailing-comma, --force-grid-wrap=0, --use-parentheses, --line-width=99]
 
@@ -43,7 +43,7 @@ repos:
     -   id: flake8
         additional_dependencies: [flake8~=3.7.3]
         args: [--max-line-length=99]
-        name: Check style
+        name: Check Python Style
         stages: [push]
 
     #####################################
@@ -53,9 +53,21 @@ repos:
     rev: 5.0.2
     hooks:
     -   id: pydocstyle
-        name: Check documentation
+        name: Check Python Documentation
         stages: [push]
 
+
+    #####################################
+    #        Format Nix files           #
+    #####################################
+-   repo: local
+    hooks:
+    -   id: nixpkgs-fmt
+        name: Prettify Nix Files
+        entry: nixpkgs-fmt
+        language: system
+        types: [nix]
+
     #####################################
     #          Runs unit tests          #
     #####################################
@@ -66,4 +78,4 @@ repos:
         entry: pytest -v
         language: system
         types: [python]
-        stages: [push]
+        always_run: true