Please note that this version of Decombinator is out of date!

As of 2016, the current version (v3) is located on the more recent group page for the Innate2Adaptive lab.

uclinfectionimmunity / Decombinator

v2.2

Decombinator is a tool for fast, efficient analysis of T cell receptor repertoires

Please see the manual for details and instructions.

More details can be found in the paper: please see Thomas et al, Bioinformatics, 2013.

Name		Name	Last commit message	Last commit date
Latest commit History 14 Commits
.gitattributes		.gitattributes
.gitignore		.gitignore
AddAll2Hexr.py		AddAll2Hexr.py
DecombinatorFunctionsV2_2.py		DecombinatorFunctionsV2_2.py
DecombinatorV2Manual.pdf		DecombinatorV2Manual.pdf
DecombinatorV2_2.py		DecombinatorV2_2.py
Plotting.py		Plotting.py
README.md		README.md
ShortReadDecombinator.py		ShortReadDecombinator.py
human_TRAJ_region.fasta		human_TRAJ_region.fasta
human_TRAV_region.fasta		human_TRAV_region.fasta
human_TRBD_region.fasta		human_TRBD_region.fasta
human_TRBJ_region.fasta		human_TRBJ_region.fasta
human_TRBV_region.fasta		human_TRBV_region.fasta
human_TRDJ_region.fasta		human_TRDJ_region.fasta
human_TRDV_region.fasta		human_TRDV_region.fasta
human_TRGJ_region.fasta		human_TRGJ_region.fasta
human_TRGV_region.fasta		human_TRGV_region.fasta
humantags_traj.txt		humantags_traj.txt
humantags_trav.txt		humantags_trav.txt
humantags_trbj.txt		humantags_trbj.txt
humantags_trbv.txt		humantags_trbv.txt
humantags_trdj.txt		humantags_trdj.txt
humantags_trdv.txt		humantags_trdv.txt
humantags_trgj.txt		humantags_trgj.txt
humantags_trgv.txt		humantags_trgv.txt
mouse_TRAJ_region.fasta		mouse_TRAJ_region.fasta
mouse_TRAV_region.fasta		mouse_TRAV_region.fasta
mouse_TRBJ_region.fasta		mouse_TRBJ_region.fasta
mouse_TRBV_region.fasta		mouse_TRBV_region.fasta
mouse_TRDJ_region.fasta		mouse_TRDJ_region.fasta
mouse_TRDV_region.fasta		mouse_TRDV_region.fasta
mouse_TRGJ_region.fasta		mouse_TRGJ_region.fasta
mouse_TRGV_region.fasta		mouse_TRGV_region.fasta
mousetags_traj.txt		mousetags_traj.txt
mousetags_trav.txt		mousetags_trav.txt
mousetags_trbj.txt		mousetags_trbj.txt
mousetags_trbv.txt		mousetags_trbv.txt
mousetags_trdj.txt		mousetags_trdj.txt
mousetags_trdv.txt		mousetags_trdv.txt
mousetags_trgj.txt		mousetags_trgj.txt
mousetags_trgv.txt		mousetags_trgv.txt
testseqs.fastq		testseqs.fastq

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Please note that this version of Decombinator is out of date!

As of 2016, the current version (v3) is located on the more recent group page for the Innate2Adaptive lab.

uclinfectionimmunity / Decombinator

v2.2

Decombinator is a tool for fast, efficient analysis of T cell receptor repertoires

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Please note that this version of Decombinator is out of date!

As of 2016, the current version (v3) is located on the more recent group page for the Innate2Adaptive lab.

uclinfectionimmunity / Decombinator

v2.2

Decombinator is a tool for fast, efficient analysis of T cell receptor repertoires

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