Merge pull request #2058 from tskit-dev/test

Fix linux wheel building and testing

.github/workflows/docker/buildwheel.sh

@@ -21,12 +21,14 @@ git config --global --add safe.directory /project
 # Fetch the full history as we'll be missing tags otherwise.
 git fetch --unshallow
 for V in "${PYTHON_VERSIONS[@]}"; do
+    git reset --hard
+    git clean -fd
     PYBIN=/opt/python/$V/bin
     rm -rf build/       # Avoid lib build by one Python is used by another
     $PYBIN/python -m venv env
     source env/bin/activate
-    python -m pip install --upgrade build
-    SETUPTOOLS_SCM_DEBUG=1 python -m build
+    $PYBIN/python -m pip install --upgrade build
+    SETUPTOOLS_SCM_DEBUG=1 $PYBIN/python -m build
 done
 
 cd dist

.github/workflows/docker/shared.env

@@ -1,7 +1,7 @@
 PYTHON_VERSIONS=(
-    cp310-cp310
     cp39-cp39
     cp38-cp38
     cp37-cp37m
+    cp310-cp310
 )
 GSL_VERSION=2.6

.github/workflows/wheels.yml

@@ -93,7 +93,9 @@ jobs:
         run: |
           python -VV
           # Install the local wheel
-          pip install msprime --only-binary msprime -f .
+          pip install msprime
+          pip uninstall --yes msprime
+          pip install msprime --no-index --only-binary msprime -f .
           python -c "import msprime"
           msp simulate 10 tmp.trees
           tskit info tmp.trees
@@ -118,7 +120,9 @@ jobs:
         run: |
           python -VV
           # Install the local wheel
-          pip install msprime --only-binary msprime -f .
+          pip install msprime
+          pip uninstall --yes msprime
+          pip install msprime --no-index --only-binary msprime -f .
           python -c "import msprime"
           msp simulate 10 tmp.trees
           tskit info tmp.trees