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ci: update how we append to PATH in actions #568

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merged 14 commits into from
Oct 18, 2023
Merged

ci: update how we append to PATH in actions #568

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e82473f
ci: update how we append to PATH in actions
mbhall88 Oct 18, 2023
50f551d
ci: add perl to dependency install
mbhall88 Oct 18, 2023
d565778
ci: check perl installation
mbhall88 Oct 18, 2023
a398d1d
ci: check perl installation
mbhall88 Oct 18, 2023
734ec0f
ci: fix path append
mbhall88 Oct 18, 2023
29113ee
ci: add ncurses
mbhall88 Oct 18, 2023
801c2e3
ci: add tmate action
mbhall88 Oct 18, 2023
ec9d151
ci: try different samtools version grab
mbhall88 Oct 18, 2023
13217c5
ci: try different samtools version grab
mbhall88 Oct 18, 2023
c556d53
ci: try different samtools version grab
mbhall88 Oct 18, 2023
44f2f10
ci: try different samtools version grab
mbhall88 Oct 18, 2023
283f4b7
ci: try different samtools version grab
mbhall88 Oct 18, 2023
4e7cfff
ci: remove tmp steps
mbhall88 Oct 18, 2023
a6e2490
replace travis status badge with actions badge
mbhall88 Oct 18, 2023
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8 changes: 4 additions & 4 deletions .github/workflows/main.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -8,16 +8,16 @@ jobs:

steps:
- name: Checkout code
uses: actions/checkout@v2
uses: actions/checkout@v4

- name: Install Dependencies
run: |
sudo apt-get update
sudo apt-get install -y libstdc++6 liblzma5 libbz2-1.0 bioperl
sudo apt-get install -y libstdc++6 liblzma5 libbz2-1.0 bioperl libncursesw5

- name: Set PATH for binaries
- name: Add binaries to PATH
run: |
echo "$PWD/bin:$PWD/binaries/noarch:$PWD/binaries/linux:$PATH" >> $GITHUB_ENV
echo "$PWD/bin:$PWD/binaries/noarch:$PWD/binaries/linux" >> $GITHUB_PATH

- name: Check binaries
run: |
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2 changes: 1 addition & 1 deletion README.md
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@@ -1,4 +1,4 @@
[![Build Status](https://travis-ci.org/tseemann/snippy.svg?branch=master)](https://travis-ci.org/tseemann/snippy)
[![CI](https://github.com/tseemann/snippy/actions/workflows/main.yml/badge.svg)](https://github.com/tseemann/snippy/actions/workflows/main.yml)
[![License: GPL v2](https://img.shields.io/badge/License-GPL%20v2-blue.svg)](https://www.gnu.org/licenses/old-licenses/gpl-2.0.en.html)
![Don't judge me](https://img.shields.io/badge/Language-Perl_5-steelblue.svg)

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