Scripts and procedures for detecting positively selected genes and codons in primates

Program for estimating dN/dS in overlapping genes (OLGs)

Genome-wide detection of positive selection

Simple code for PS detection, can be used on several files

Fast heuristic methods of detecting adaptive evolution in protein-coding genes.

Parse output JSON files from the Hyphy AbsREL package for positive selection.

FastScreen: a Compi pipeline for Fast Screening of PSS (Positively Selected Sites).

Population-based pathway analysis of SNP-SNP coevolution

This stand-alone program implements the Fine-Mapping of Adaptive Variation (FineMAV) statistic for detection of positively selected variants.

PopHumanVar is an interactive app created with Shiny, that can be used for the functional characterization and prioritization of genomic variants

Nextflow pipeline to assess the impact of positive selection on Identity by Descent (IBD)-based inferences, utilizing population genetic simulations and true IBD inferences.

A python package to facilitate identity-by-descent-based analysis

B+ A database of Positively Selected Sites discovered with ADOPS

Automatic Detection of Positively Selected Sites