Genomic interval operations on Pandas DataFrames
Publication quality NGS track plotting
WisecondorX — An evolved WISECONDOR
SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances
is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.
HemTools: a collection of NGS pipelines and bioinformatic analyses
A comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform
PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.
Metagenomic pipeline and other general scripts used in the lab.
Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researchers from wet and dry lab to perform downstream Bioinformatics analysis
This RNAseq data analysis tutorial is created for educational purpose
Project Manager for NGS data analysis
GitHub for the SIB courses NGS - Genome variant analysis
R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)
A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
TransfoRNA: Navigating the Uncertainties of Small RNA Annotation with an Adaptive Machine Learning Strategy
Flexible analysis of high-content CRISPR screening
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