JP-3739: Update NRM geometry, affine distortion use #8974
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…les from already-averaged fringe phases or amplitudes, WIP
…an for uncertainty estimates
…documentation with examples.
… calibrator_object_id in calibrated files. Use ROLL_REF instead of PA_V3, though leaving old variable names for now.
Codecov ReportAttention: Patch coverage is
Additional details and impacted files@@ Coverage Diff @@
## main #8974 +/- ##
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- Coverage 64.52% 62.52% -2.01%
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Files 375 376 +1
Lines 38739 38921 +182
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- Hits 24997 24335 -662
- Misses 13742 14586 +844 ☔ View full report in Codecov by Sentry. 🚨 Try these New Features:
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…oning'. Not yet default behavior.
…d values in mask_definitions.py. Removed references to other NRMs.
…stdatamodels NRMModel
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Resolves JP-3739
This PR addresses JP-3739, which includes updates associated with the mask geometry. The NRM reference file is being updated to be distorted by the affine transform parameters derived during commissioning, and the datamodel definitions have also been updated to allow the AMI3 code to read the mask hole centers and other pupil geometry from the reference file datamodel, rather than it being hardcoded in mask_definitions.py. The new
mask_definition_ami.NRM_definitionlargely keeps the same structure asmask_definitions.NRM_mask_definitionsbut is simplified because there is only one NRM on JWST. A special input argument for affine2d, 'commissioning' is the new default and uses the commissioning affine parameters for the analytical form of the mask (rather than distortion-free or rotation-only).(to be merged after #8846
Tasks
Build 11.3(use the latest build if not sure)no-changelog-entry-needed)changes/:echo "changed something" > changes/<PR#>.<changetype>.rst(see below for change types)docs/pageokify_regteststo update the truth filesnews fragment change types...
changes/<PR#>.general.rst: infrastructure or miscellaneous changechanges/<PR#>.docs.rstchanges/<PR#>.stpipe.rstchanges/<PR#>.datamodels.rstchanges/<PR#>.scripts.rstchanges/<PR#>.fits_generator.rstchanges/<PR#>.set_telescope_pointing.rstchanges/<PR#>.pipeline.rststage 1
changes/<PR#>.group_scale.rstchanges/<PR#>.dq_init.rstchanges/<PR#>.emicorr.rstchanges/<PR#>.saturation.rstchanges/<PR#>.ipc.rstchanges/<PR#>.firstframe.rstchanges/<PR#>.lastframe.rstchanges/<PR#>.reset.rstchanges/<PR#>.superbias.rstchanges/<PR#>.refpix.rstchanges/<PR#>.linearity.rstchanges/<PR#>.rscd.rstchanges/<PR#>.persistence.rstchanges/<PR#>.dark_current.rstchanges/<PR#>.charge_migration.rstchanges/<PR#>.jump.rstchanges/<PR#>.clean_flicker_noise.rstchanges/<PR#>.ramp_fitting.rstchanges/<PR#>.gain_scale.rststage 2
changes/<PR#>.assign_wcs.rstchanges/<PR#>.badpix_selfcal.rstchanges/<PR#>.msaflagopen.rstchanges/<PR#>.nsclean.rstchanges/<PR#>.imprint.rstchanges/<PR#>.background.rstchanges/<PR#>.extract_2d.rstchanges/<PR#>.master_background.rstchanges/<PR#>.wavecorr.rstchanges/<PR#>.srctype.rstchanges/<PR#>.straylight.rstchanges/<PR#>.wfss_contam.rstchanges/<PR#>.flatfield.rstchanges/<PR#>.fringe.rstchanges/<PR#>.pathloss.rstchanges/<PR#>.barshadow.rstchanges/<PR#>.photom.rstchanges/<PR#>.pixel_replace.rstchanges/<PR#>.resample_spec.rstchanges/<PR#>.residual_fringe.rstchanges/<PR#>.cube_build.rstchanges/<PR#>.extract_1d.rstchanges/<PR#>.resample.rststage 3
changes/<PR#>.assign_mtwcs.rstchanges/<PR#>.mrs_imatch.rstchanges/<PR#>.tweakreg.rstchanges/<PR#>.skymatch.rstchanges/<PR#>.exp_to_source.rstchanges/<PR#>.outlier_detection.rstchanges/<PR#>.tso_photometry.rstchanges/<PR#>.stack_refs.rstchanges/<PR#>.align_refs.rstchanges/<PR#>.klip.rstchanges/<PR#>.spectral_leak.rstchanges/<PR#>.source_catalog.rstchanges/<PR#>.combine_1d.rstchanges/<PR#>.ami.rstother
changes/<PR#>.wfs_combine.rstchanges/<PR#>.white_light.rstchanges/<PR#>.cube_skymatch.rstchanges/<PR#>.engdb_tools.rstchanges/<PR#>.guider_cds.rst