gowdl

A Workflow Description Language (WDL) parser in Go.

• NOTE: this project is not under active development at the moment
• gowdl provides the generated ANTLR4 parsers for WDL versions 1.0 and 1.1
• Go bindings for the WDL abtract syntax tree (AST) is work-in-progress
  • Currently, WDL imports can be parsed and used for projects like wdl-viewer

API

gowdl provides a few APIs that can be used in your own project.

parsers package

To construct an ANTLR4 WDL parser, use:

import "github.com/shuangkun/gowdl/parsers"

func main() {
    // parser for version 1.0
    p := parsers.NewWdlV1_0Parser(data)

    // parser for version 1.1
    p := parsers.NewWdlV1_1Parser(data)

    // ...
}

CLI commands

The gowdl CLI provides the following commands.

gowdl graph [FILE]: get the dependency graph of WDL

NOTE only imports are parsed - AST for the rest of the document is not all available.

Sample input:

# example.wdl
version 1.0

import "A.wdl"
import "B.wdl" as importB

workflow example {}

# A.wdl
version 1.0

task taskA {
    command {}
}

# B.wdl
version 1.0

import "C.wdl"

task taskB {
    command {}
}

# C.wdl
version 1.0

task taskC {
    command {}
}

Sample output:

[
    {
        "url": "example.wdl",
        "version": "1.0",
        "workflow": {
            "name": "example"
        },
        "imports": [
            {
                "url": "A.wdl",
                "absoluteUrl": "A.wdl"
            },
            {
                "url": "B.wdl",
                "absoluteUrl": "B.wdl",
                "as": "importB"
            }
        ]
    },
    {
        "url": "A.wdl",
        "version": "1.0"
    },
    {
        "url": "B.wdl",
        "version": "1.0",
        "imports": [
            {
                "url": "C.wdl",
                "absoluteUrl": "C.wdl"
            }
        ]
    },
    {
        "url": "C.wdl",
        "version": "1.0"
    }
]

Getting started

If you want to contribute to the project or try it out locally, you can install gowdl in the following ways:

Install from source

To install gowdl from source, first clone this repo:

https://github.com/shuangkun/gowdl.git

Then, generate the necessary parsers:

make generate

Finally, install the local package:

go install .

Add as dependency via go get

This is not available yet.

LICENSE

MIT License. Copyright (c) 2022-2023 William Gao