Add testcase for VCF file #34
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| name: Run plugin tests | |
| on: | |
| push: | |
| pull_request: | |
| branches: [main] | |
| merge_group: | |
| types: [checks_requested] | |
| branches: [main] | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| JAVA_VERSION: ["11", "17", "21"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup Java ${{ matrix.JAVA_VERSION }} | |
| uses: actions/setup-java@v4 | |
| with: | |
| distribution: "temurin" | |
| java-version: "${{ matrix.JAVA_VERSION }}" | |
| - name: Setup Nextflow | |
| uses: nf-core/setup-nextflow@v2 | |
| - name: Install nf-test | |
| uses: nf-core/setup-nf-test@v1 | |
| - name: Build plugin | |
| run: mvn install | |
| - name: Test the plugin | |
| env: | |
| NFT_DIFF: "pdiff" | |
| NFT_DIFF_ARGS: "--line-numbers --width 120 --expand-tabs=2" | |
| run: | | |
| ./tests.sh | |
| - name: Clean up | |
| if: always() | |
| run: | | |
| sudo rm -rf /home/ubuntu/tests/ |