❌ /home/runner/work/PyNucleus/PyNucleus/base/PyNucleus_base/io.pyx
	42:58 E741 ambiguous variable name 'I'
❌ /home/runner/work/PyNucleus/PyNucleus/base/PyNucleus_base/SSS_LinearOperator_REAL.pxi
	291:49 E127 continuation line over-indented for visual indent
❌ /home/runner/work/PyNucleus/PyNucleus/base/PyNucleus_base/linalg.pyx
	821:5 E741 ambiguous variable name 'l'
❌ /home/runner/work/PyNucleus/PyNucleus/base/PyNucleus_base/tupleDict.pyx
	492:13 E741 ambiguous variable name 'l'
❌ /home/runner/work/PyNucleus/PyNucleus/base/PyNucleus_base/opt_false_mkl_trisolve.pxi
	27:13 E722 do not use bare 'except'
❌ /home/runner/work/PyNucleus/PyNucleus/base/PyNucleus_base/CSR_LinearOperator_COMPLEX.pxi
	285:46 E127 continuation line over-indented for visual indent
❌ /home/runner/work/PyNucleus/PyNucleus/base/PyNucleus_base/solvers.pyx
	56:38 dangerous default value!
❌ /home/runner/work/PyNucleus/PyNucleus/base/PyNucleus_base/CSR_LinearOperator_REAL.pxi
	285:46 E127 continuation line over-indented for visual indent
❌ /home/runner/work/PyNucleus/PyNucleus/base/PyNucleus_base/IJOperator_{SCALAR}.pxi
	37:9 E741 ambiguous variable name 'I'
❌ /home/runner/work/PyNucleus/PyNucleus/base/PyNucleus_base/solver_ichol.pxi
	27:13 E722 do not use bare 'except'
❌ /home/runner/work/PyNucleus/PyNucleus/base/PyNucleus_base/IJOperator_REAL.pxi
	37:9 E741 ambiguous variable name 'I'
❌ /home/runner/work/PyNucleus/PyNucleus/base/PyNucleus_base/tupleDict_INDEX.pxi
	39:9 E741 ambiguous variable name 'l'
❌ /home/runner/work/PyNucleus/PyNucleus/base/PyNucleus_base/ip_norm.pyx
	261:23 E741 ambiguous variable name 'I'
❌ /home/runner/work/PyNucleus/PyNucleus/base/PyNucleus_base/sparseGraph.pyx
	64:41 E741 ambiguous variable name 'l'
❌ /home/runner/work/PyNucleus/PyNucleus/base/PyNucleus_base/linear_operators.pyx
	730:13 E741 ambiguous variable name 'l'
❌ /home/runner/work/PyNucleus/PyNucleus/base/PyNucleus_base/tupleDict_{VALUE}.pxi
	39:9 E741 ambiguous variable name 'l'
❌ /home/runner/work/PyNucleus/PyNucleus/base/PyNucleus_base/SSS_LinearOperator_COMPLEX.pxi
	291:49 E127 continuation line over-indented for visual indent
❌ /home/runner/work/PyNucleus/PyNucleus/base/PyNucleus_base/IJOperator_COMPLEX.pxi
	37:9 E741 ambiguous variable name 'I'
❌ /home/runner/work/PyNucleus/PyNucleus/base/PyNucleus_base/opt_true_mkl_trisolve.pxi
	62:13 E722 do not use bare 'except'
❌ /home/runner/work/PyNucleus/PyNucleus/base/PyNucleus_base/SSS_LinearOperator_{SCALAR}.pxi
	367:17 E741 ambiguous variable name 'l'
❌ /home/runner/work/PyNucleus/PyNucleus/metisCy/PyNucleus_metisCy/parmetisCy.pyx
	45:161 E501 line too long (183 > 160 characters)
❌ /home/runner/work/PyNucleus/PyNucleus/fem/PyNucleus_fem/scalar_coefficient_stiffness_3D_P2.pxi
	21:20 E741 ambiguous variable name 'I'
❌ /home/runner/work/PyNucleus/PyNucleus/fem/PyNucleus_fem/splitting.pyx
	143:161 E501 line too long (163 > 160 characters)
❌ /home/runner/work/PyNucleus/PyNucleus/fem/PyNucleus_fem/scalar_coefficient_stiffness_1D_P2.pxi
	20:20 E741 ambiguous variable name 'I'
❌ /home/runner/work/PyNucleus/PyNucleus/fem/PyNucleus_fem/scalar_coefficient_stiffness_1D_P1.pxi
	20:20 E741 ambiguous variable name 'I'
❌ /home/runner/work/PyNucleus/PyNucleus/fem/PyNucleus_fem/femCy.pyx
	8:35 'sinh' imported but unused
❌ /home/runner/work/PyNucleus/PyNucleus/fem/PyNucleus_fem/repartitioner.pyx
	168:56 dangerous default value!
❌ /home/runner/work/PyNucleus/PyNucleus/fem/PyNucleus_fem/quadrature.pyx
	39:9 E741 ambiguous variable name 'I'
❌ /home/runner/work/PyNucleus/PyNucleus/fem/PyNucleus_fem/meshCy.pyx
	407:17 E741 ambiguous variable name 'l'
❌ /home/runner/work/PyNucleus/PyNucleus/fem/PyNucleus_fem/DoFMaps.pyx
	50:9 E741 ambiguous variable name 'l'
❌ /home/runner/work/PyNucleus/PyNucleus/fem/PyNucleus_fem/functions.pyx
	332:14 E741 ambiguous variable name 'l'
❌ /home/runner/work/PyNucleus/PyNucleus/fem/PyNucleus_fem/scalar_coefficient_stiffness_3D_P1.pxi
	21:20 E741 ambiguous variable name 'I'
❌ /home/runner/work/PyNucleus/PyNucleus/fem/PyNucleus_fem/meshOverlaps.pyx
	92:9 E741 ambiguous variable name 'l'
❌ /home/runner/work/PyNucleus/PyNucleus/fem/PyNucleus_fem/scalar_coefficient_stiffness_2D_P2.pxi
	21:20 E741 ambiguous variable name 'I'
❌ /home/runner/work/PyNucleus/PyNucleus/fem/PyNucleus_fem/algebraicOverlaps.pyx
	13:45 'INTERIOR' imported but unused
❌ /home/runner/work/PyNucleus/PyNucleus/fem/PyNucleus_fem/scalar_coefficient_stiffness_2D_P1.pxi
	21:20 E741 ambiguous variable name 'I'
❌ /home/runner/work/PyNucleus/PyNucleus/fem/PyNucleus_fem/boundaryLayerCy.pyx
	28:5 pointless string statement
❌ /home/runner/work/PyNucleus/PyNucleus/multilevelSolver/PyNucleus_multilevelSolver/restriction_1D_P2_P3.pxi
	9:42 E127 continuation line over-indented for visual indent
❌ /home/runner/work/PyNucleus/PyNucleus/multilevelSolver/PyNucleus_multilevelSolver/restriction_1D_P1_P3.pxi
	9:42 E127 continuation line over-indented for visual indent
❌ /home/runner/work/PyNucleus/PyNucleus/nl/PyNucleus_nl/fractionalLaplacian1D.pyx
	16:44 'P1_DoFMap' imported but unused
❌ /home/runner/work/PyNucleus/PyNucleus/nl/PyNucleus_nl/fractionalOrders.pyx
	832:23 E741 ambiguous variable name 'I'
❌ /home/runner/work/PyNucleus/PyNucleus/nl/PyNucleus_nl/nonlocalOperator_REAL.pxi
	122:21 E741 ambiguous variable name 'l'
❌ /home/runner/work/PyNucleus/PyNucleus/nl/PyNucleus_nl/kernelsCy.pyx
	11:25 'abs' imported but unused
❌ /home/runner/work/PyNucleus/PyNucleus/nl/PyNucleus_nl/nonlocalOperator.pxd
	74:1 W391 blank line at end of file
❌ /home/runner/work/PyNucleus/PyNucleus/nl/PyNucleus_nl/nonlocalOperator_COMPLEX.pxi
	122:21 E741 ambiguous variable name 'l'
❌ /home/runner/work/PyNucleus/PyNucleus/nl/PyNucleus_nl/fractionalLaplacian1D.pxd
	51:1 W391 blank line at end of file
❌ /home/runner/work/PyNucleus/PyNucleus/nl/PyNucleus_nl/kernelNormalization.pxd
	102:1 W391 blank line at end of file
❌ /home/runner/work/PyNucleus/PyNucleus/nl/PyNucleus_nl/fractionalLaplacian2D.pyx
	12:36 'INDEX' imported but unused
❌ /home/runner/work/PyNucleus/PyNucleus/nl/PyNucleus_nl/kernelsCy.pxd
	125:1 W391 blank line at end of file
❌ /home/runner/work/PyNucleus/PyNucleus/nl/PyNucleus_nl/clusterMethodCy.pyx
	207:161 E501 line too long (170 > 160 characters)
❌ /home/runner/work/PyNucleus/PyNucleus/nl/PyNucleus_nl/nonlocalAssembly_{SCALAR}.pxi
	157:13 E741 ambiguous variable name 'I'
❌ /home/runner/work/PyNucleus/PyNucleus/nl/PyNucleus_nl/nonlocalAssembly_COMPLEX.pxi
	157:13 E741 ambiguous variable name 'I'
❌ /home/runner/work/PyNucleus/PyNucleus/nl/PyNucleus_nl/fractionalLaplacian2D.pxd
	52:1 W391 blank line at end of file
❌ /home/runner/work/PyNucleus/PyNucleus/nl/PyNucleus_nl/nonlocalOperator_{SCALAR}.pxi
	122:21 E741 ambiguous variable name 'l'
❌ /home/runner/work/PyNucleus/PyNucleus/nl/PyNucleus_nl/nonlocalAssembly_REAL.pxi
	157:13 E741 ambiguous variable name 'I'
❌ /home/runner/work/PyNucleus/PyNucleus/nl/PyNucleus_nl/nonlocalOperator.pyx
	41:13 E741 ambiguous variable name 'l'
❌ /home/runner/work/PyNucleus/PyNucleus/nl/PyNucleus_nl/twoPointFunctions.pyx
	15:36 'INDEX' imported but unused
❌ /home/runner/work/PyNucleus/PyNucleus/nl/PyNucleus_nl/interactionDomains.pyx
	72:13 E741 ambiguous variable name 'l'
❌ /home/runner/work/PyNucleus/PyNucleus/nl/PyNucleus_nl/nonlocalAssembly.pyx
	20:58 'Product_DoFMap' imported but unused
❌ /home/runner/work/PyNucleus/PyNucleus/nl/PyNucleus_nl/bitset.pyx
	48:48 E128 continuation line under-indented for visual indent

❌ base/PyNucleus_base/utilsFem.py
	107:13 E722 do not use bare 'except'
❌ base/setup.py
	23:5 F401 'scipy' imported but unused
❌ drivers/brusselator.py
	220:5 E741 ambiguous variable name 'I'
❌ drivers/brusselatorMovie.py
	36:1 E722 do not use bare 'except'
❌ drivers/runNonlocal.py
	10:1 F401 'PyNucleus.NEUMANN' imported but unused
❌ drivers/variableOrder.py
	18:1 F401 'PyNucleus.nl.fractionalOrders.smoothedLeftRightFractionalOrder' imported but unused
❌ examples/example1.py
	123:1 W391 blank line at end of file
❌ examples/example2.py
	124:1 W391 blank line at end of file
❌ examples/example3.py
	97:1 W391 blank line at end of file
❌ fem/PyNucleus_fem/factories.py
	12:1 F401 '.functions.real' imported but unused
❌ fem/PyNucleus_fem/mesh.py
	2249:17 E722 do not use bare 'except'
❌ multilevelSolver/PyNucleus_multilevelSolver/hierarchies.py
	148:20 E111 indentation is not a multiple of 4
❌ nl/PyNucleus_nl/discretizedProblems.py
	25:1 F401 '.kernelsCy.FRACTIONAL' imported but unused
❌ nl/PyNucleus_nl/helpers.py
	523:161 E501 line too long (168 > 160 characters)
❌ nl/PyNucleus_nl/kernels.py
	28:1 F401 '.kernelsCy.PERIDYNAMIC' imported but unused
❌ nl/PyNucleus_nl/nonlocalProblems.py
	1067:21 E731 do not assign a lambda expression, use a def
❌ nl/PyNucleus_nl/operatorInterpolation.py
	141:9 E731 do not assign a lambda expression, use a def
❌ packageTools/PyNucleus_packageTools/__init__.py
	147:13 E722 do not use bare 'except'
❌ tests/bitArray.py
	14:5 E741 ambiguous variable name 'I'
❌ tests/drift.py
	44:17 E741 ambiguous variable name 'l'
❌ tests/drivers_base.py
	8:1 F401 'mpi4py.MPI' imported but unused
❌ tests/test_base.py
	8:1 F403 'from drivers_base import *' used; unable to detect undefined names
❌ tests/test_h2finiteHorizon.py
	12:1 F401 'PyNucleus.nl.fractionalOrders.leftRightFractionalOrder' imported but unused
❌ tests/test_kernels.py
	141:1 E305 expected 2 blank lines after class or function definition, found 1
❌ tests/test_nearField.py
	382:1 E303 too many blank lines (4)