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175 Open 260 Closed
175 Open 260 Closed
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Issues list

Modify SAM spec document to better represent restrictions in the SEQ field sam
#800 opened Oct 31, 2024 by Psy-Fer
4
Represent U in SAM rather than T for reads from RNA sam
#801 opened Oct 31, 2024 by Psy-Fer
12
Somewhat unclear references to types in SAMtags sam sam-tags
#798 opened Oct 14, 2024 by cmdcolin
@jkbonfield
1
Redefine GQ vcf
#797 opened Oct 10, 2024 by d-cameron
3
VCFv4.5 gVCF example malformed bug vcf
#791 opened Sep 15, 2024 by d-cameron
@d-cameron
LGL and LGP type incorrect bug vcf
#790 opened Sep 15, 2024 by d-cameron
@d-cameron
MM tag preferred format for TAPS data sam sam-tags
#785 opened Aug 22, 2024 by jamesbaye
1
@jkbonfield
1
INFO/END should not be deprecated vcf
#784 opened Aug 12, 2024 by pd3
14
INFO CIPOS Number=2xA vcf
#783 opened Aug 10, 2024 by rkimoakbioinformatics
vcf: VCF 4.5 gVCF example has off-by-one errors vcf
#781 opened Aug 8, 2024 by zaeleus
Using ChaCha20-Poly1305 for encryption is NOT FIPS140-3 compliant and not justified and is considered unprotected plaintext crypt4gh
#780 opened Aug 7, 2024 by mmokrejs
3
BED "chrom" field regex is inconsistent with existing practice bed
#779 opened Jul 26, 2024 by EricR86
5
FORMAT field CICN and its relation to CN field vcf
#778 opened Jul 18, 2024 by vasudeva8
@d-cameron
Number, type and description on FORMAT not in sync with List of changes vcf
#777 opened Jul 18, 2024 by vasudeva8
vcf: Invalid unstructured header line in VCF 4.3 example complexfile_passed_000.vcf vcf
#772 opened May 31, 2024 by zaeleus
1
@d-cameron
2
refget: v2 spec for Range header errors does not align with typical usage refget
#771 opened May 29, 2024 by davidlougheed
VCF4.4 SVLEN requirement across different variant representations vcf
#769 opened May 2, 2024 by tcezard
6
VCF Draft 4.5 and Modified Bases vcf
#767 opened Apr 22, 2024 by cjw85 VCFv4.5 RC1
@d-cameron
29
Questions about third-party use of test data
#766 opened Apr 19, 2024 by athos
6
CSI file is BGZF compressed but this is not mentioned in the CSV1 spec
#765 opened Apr 13, 2024 by bguo068
2
FAIRsharing Record Query - BED format bed
#746 opened Nov 15, 2023 by allysonlister
@michaelmhoffman
What does . mean for an A, R, or G indexed field? vcf
#737 opened Jul 31, 2023 by danking
@d-cameron
6
Consider 64-bit values in BCF, BAM and CRAM cram sam vcf
#735 opened Jul 18, 2023 by jkbonfield
2
Circular chromosomes in the VCF header vcf
#733 opened Jul 5, 2023 by nh13
1
sam-tags: MM field value pattern does not allow ambiguity codes sam sam-tags
#732 opened Jun 27, 2023 by zaeleus
3
ProTip! Exclude everything labeled bug with -label:bug.