Merge pull request #18 from kbroman/cran

Fix link to Rd file

.github/workflows/R-CMD-check.yaml

@@ -2,9 +2,9 @@
 # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
 on:
   push:
-    branches: [main, master]
+    branches: [main, master, cran]
   pull_request:
-    branches: [main, master]
+    branches: [main, master, cran]
 
 name: R-CMD-check
 

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: qtl2fst
-Version: 0.26
-Date: 2021-10-07
+Version: 0.28
+Date: 2024-07-16
 Title: Database Storage of Genotype Probabilities for QTL Mapping
 Description: Uses the 'fst' package to store genotype probabilities on disk for the 'qtl2' package. These genotype probabilities are a central data object for mapping quantitative trait loci (QTL), but they can be quite large. The facilities in this package enable the genotype probabilities to be stored on disk, leading to reduced memory usage with only a modest increase in computation time.
 Author: Karl W Broman [aut, cre] (<https://orcid.org/0000-0002-4914-6671>),
@@ -26,5 +26,5 @@ License: GPL-3
 URL: https://github.com/rqtl/qtl2fst
 ByteCompile: true
 Encoding: UTF-8
-RoxygenNote: 7.1.2
+RoxygenNote: 7.3.2
 Roxygen: list(markdown=TRUE)

NEWS.md

@@ -1,3 +1,10 @@
+## qtl2fst 0.28 (2024-07-16)
+
+### Minor changes
+
+- Fixed link in documentation.
+
+
 ## qtl2fst 0.26 (2021-10-07)
 
 ### Minor changes
@@ -40,11 +47,11 @@
 
 - Added `calc_genoprob_fst()` which combines `calc_genoprob()` and
   `fst_genoprob()` to save use of RAM when calculating genotype
-  probabilties.
+  probabilities.
 
 - Added `genoprob_to_alleleprob_fst()` which combines
   `genoprob_to_alleleprob()` and `fst_genoprob()` to save use of RAM
-  when converting genotype probabilties to allele dosages.
+  when converting genotype probabilities to allele dosages.
 
 - Added `summary()` and `print()` functions for `"fst_genoprob"`
   objects.

R/genoprob_to_alleleprob_fst.R

@@ -2,10 +2,10 @@
 #' Convert genotype probabilities to allele probabilities and write to fst database
 #'
 #' Reduce genotype probabilities (as calculated by
-#' [calc_genoprob()]) to allele probabilities, writing them to an fst database.
+#' [qtl2::calc_genoprob()]) to allele probabilities, writing them to an fst database.
 #'
 #' @param probs Genotype probabilities, as calculated from
-#' [calc_genoprob()].
+#' [qtl2::calc_genoprob()].
 #' @param fbase Base of filename for fst database.
 #' @param fdir Directory for fst database.
 #' @param quiet IF `FALSE`, print progress messages.