v0.4.5

What's Changed

• Bump all deps, including python (>=3.11,<3.13) by @matthuska in #24

Full Changelog: v0.4.4...v0.4.5

Bump dependency versions because of joblib security alert

This also required tweaking the python dependency to only allow 3.9 and 3.10 (rather than >= 3.9), because of scipy.

Change minimum Python version from 3.10 to 3.9

This is due to both bioconda and conda-forge not supporting Python 3.10 yet. See bioconda/bioconda-recipes#35488 for details.

Bump Python version requirement to 3.10+

What's Changed

• Require Python 3.10+ only instead of 3.9 and 3.10 by @matthuska in #16

Full Changelog: v0.4.0...v0.4.1

Speed up distance calculation by skipping obviously distant cases

What's Changed

• Add contributing docs (CONTRIBUTING.md) and update the README.md by @matthuska in #7
• Feature/speedup submat batches by @denisbeslic tweaked by @matthuska in #9
• Create output cache dir if it doesn't exist. by @matthuska in #15
• Add more tests for filtering mutations, more specific var-type options, option for controlling number of parallel threads (--jobs) by @matthuska in #14
• Add nextclade DNA test data @denisbeslic

Full Changelog: v0.3.3...v0.4.0

Fix crash on empty DNA profile

Tiny fix to handle empty values in the column we are using as features (main the covsonar dna_profile column right now). Was causing a crash.

Minor release to add LICENSE file

v0.3.2

Release new version to include LICENSE file instead of just indiciati…

First release packaged for PyPI

Full Changelog: v0.3.0...v0.3.1