Upgrade to Cython 3 and pyarrow 13.0.0

[sjperkins]

• Closes Update build to use pyarrow 13.0.0 and Cython 3.0 #47
• Closes Support manylinux_2_28 builds #43

[sjperkins]

@orliac just a heads up that I'm changing the C++ ABI from GLIBCXX_USE_CXX11_ABI=0 to GLIBCXX_USE_CXX11_ABI=1 in this PR. I know you changed your SPAC build to use the older ABI. Previous discussion here:

• Compilation failing on RH8 with GCC 11.3.0 #29 (comment)

I would've preferred to continue with the older ABI and there isn't a problem with the wheels built with it. However, one difficulty is that pyarrow 13.0.0 releases both manylinux2014 (old ABI) and manylinux_2_28 (new ABI) wheels, and pip prefers to install the newer one by default, causing symbol incompatibilities with a manylinux2014 arcae wheel.

My intention here is to bite the bullet and configure arcae to build manylinux_2_28 only. This should be fine as pip >= 20.3 supports manylinux_x_y tags and was released in Nov 30 2020.

However, perhaps there's another way around the above issue? Let me know if you can see something I can't!

[sjperkins]

I'm intending to merge this PR soon.

[orliac]

Hi @sjperkins,
Thanks for the update. Once you've merged I will update my Spack stack accordingly and let you know about the outcome. But the move makes sense to me.

[sjperkins]

Thanks, also looks like Centos 7, on which manylinux2014 is based, will reach EOL in 9 months:

Similar to how PEP 571 and PEP 513 drew allowed shared libraries and their symbol versions from CentOS 5.11 and CentOS 6, respectively, a manylinux2014 platform tag will draw its libraries and symbol versions from CentOS 7, which will reach end-of-life on June 30th, 2024. [1]