chore: Avoid dplyr #1911
Workflow file for this run
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| on: | |
| push: | |
| branches: | |
| - main | |
| - master | |
| pull_request: | |
| branches: | |
| - main | |
| - master | |
| schedule: | |
| - cron: '0 8 * * *' | |
| name: backends | |
| jobs: | |
| matrix: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| matrix: ${{ steps.set-matrix.outputs.matrix }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| # https://github.blog/changelog/2020-04-15-github-actions-new-workflow-features/ | |
| - id: set-matrix | |
| run: | | |
| matrix=$(( | |
| echo '{ "package" : [' | |
| sed -n "/^REVDEP *:= */ { s///; p }" revdep-dev/Makefile | sed -r 's/ odbc-[^ ]*//g' | sed 's/ /,\n/g' | sed -r 's/^([^,]*)(,?)$/"\1"\2/' | |
| echo " ]}" | |
| ) | jq -c .) | |
| echo $matrix | |
| echo $matrix | jq . | |
| echo "matrix=$matrix" >> $GITHUB_OUTPUT | |
| check-matrix: | |
| runs-on: ubuntu-latest | |
| needs: matrix | |
| steps: | |
| - name: Install json2yaml | |
| run: | | |
| sudo npm install -g json2yaml | |
| - name: Check matrix definition | |
| run: | | |
| matrix='${{ needs.matrix.outputs.matrix }}' | |
| echo $matrix | |
| echo $matrix | jq . | |
| echo $matrix | json2yaml | |
| backend: | |
| needs: matrix | |
| # Need Ubuntu 20.04 for remotes::system_requirements() | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| fail-fast: false | |
| matrix: ${{fromJson(needs.matrix.outputs.matrix)}} | |
| name: ${{ matrix.package }} | |
| env: | |
| RSPM: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest" | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - name: Check rate limits | |
| run: | | |
| curl -s --header "authorization: Bearer ${{ secrets.GITHUB_TOKEN }}" https://api.github.com/rate_limit | |
| shell: bash | |
| - uses: actions/checkout@v3 | |
| - uses: ./.github/workflows/install | |
| with: | |
| install-r: false | |
| cache-version: backends-${{ matrix.package }} | |
| needs: check | |
| extra-packages: "any::pkgbuild any::remotes decor ." | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Clone backend | |
| run: | | |
| make -C revdep-dev ${{ matrix.package }} | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| # "22.04" fails here | |
| run: | | |
| while read -r cmd | |
| do | |
| eval sudo $cmd | |
| done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04", path = "revdep-dev/${{ matrix.package }}"))') | |
| - name: Install package and dependencies | |
| run: | | |
| remotes::install_local("revdep-dev/${{ matrix.package }}", dependencies = TRUE, type = .Platform$pkgType) | |
| remotes::install_local(".", type = .Platform$pkgType, force = TRUE) | |
| shell: Rscript {0} | |
| - name: Session info | |
| run: | | |
| options(width = 100) | |
| if (!requireNamespace("sessioninfo", quietly = TRUE)) install.packages("sessioninfo") | |
| pkgs <- installed.packages()[, "Package"] | |
| sessioninfo::session_info(pkgs, include_base = TRUE) | |
| shell: Rscript {0} | |
| # Begin custom: after install | |
| # Must happen after installing system dependencies, | |
| # https://github.com/ankane/setup-mariadb/issues/2 | |
| - uses: ankane/setup-mariadb@v1 | |
| if: matrix.package == 'RMariaDB' | |
| with: | |
| mariadb-version: 10.9 | |
| - name: Create database, set it to UTF-8 | |
| if: matrix.package == 'RMariaDB' | |
| run: | | |
| mysql -e "CREATE DATABASE IF NOT EXISTS test; ALTER DATABASE test CHARACTER SET 'utf8'; FLUSH PRIVILEGES;" | |
| - uses: ankane/setup-postgres@v1 | |
| if: matrix.package == 'RPostgres' | |
| with: | |
| postgres-version: 13 | |
| - name: Create database | |
| if: (runner.os != 'Windows') && (matrix.package == 'RPostgres') | |
| run: | | |
| createdb ${USER} | |
| - name: Create database | |
| if: (runner.os == 'Windows') && (matrix.package == 'RPostgres') | |
| run: | | |
| createdb ${USERNAME} | |
| shell: bash | |
| # End custom: after install | |
| - name: Test backend | |
| run: | | |
| make -C revdep-dev test-${{ matrix.package }} | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: revdep-dev/${{ matrix.package }} | |
| - name: Check rate limits | |
| if: always() | |
| run: | | |
| curl -s --header "authorization: Bearer ${{ secrets.GITHUB_TOKEN }}" https://api.github.com/rate_limit | |
| shell: bash |